Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fukomys_20damarensis_20[refseq_20GCF_5F000743615.1_202014-09-04] 74,730 sequences; 2,333,892,479 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq70234 361 4e-96 seq71365 360 2e-95 seq72909 302 4e-78 seq72697 262 3e-66 seq72298 161 8e-36 >seq70234 Length=4018830 Score = 361 bits (400), Expect = 4e-96 Identities = 257/295 (87%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | | |||||| ||||||||||||||||||||||||||| Sbjct 3779746 CAATGAATACTATGATGTGTAGTCAATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACT 3779687 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||| | |||||||||| ||||||||||||| |||||| |||||||||||| Sbjct 3779686 GGGAACCTAAGAATTCCAGATACTGCGCTGAGTGTAATAAGCTGCACCCTGCTGAGGAAA 3779627 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||| |||||||||||||||||||||| ||||| ||| |||||||||| ||||||| Sbjct 3779626 GAGACTTTGGGGCAGAGTCAAGCATGTTGGGGCTCAAGATCGCCTACTTTGCACTGATGG 3779567 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| ||||| ||||||||| || | ||||| || | ||||||||||| ||| Sbjct 3779566 ATGGAAAGGTCTATGAAATCACAGAGGGGACAGGATGTCAATGCATGGGAATCTCCTCAG 3779507 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||||| |||| || ||||||||| ||||||| || ||||| ||||| ||||| Sbjct 3779506 ATACCCACGGAGTTCCCTATCACATCTCATTTGGCTCTCGGATCCCAGGCACCAG 3779452 >seq71365 Length=7435499 Score = 360 bits (398), Expect = 2e-95 Identities = 255/290 (88%), Gaps = 3/290 (1%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | | ||||||| ||||||||||||||||||||||||||| Sbjct 2091006 CAATGAATACTATGATGTGTAGCTGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACT 2091065 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTG-AGTGTAATAGGCTGCATCCTGCTGAGGAA 5083 |||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2091066 GGGAACCTGAGAGTGCCAGATACTGTGCTGGAGTGTAATAGGCTACATCCTGCTGAGGAA 2091125 Query 5084 GGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATG 5143 || ||||| |||||||| || ||||||||| ||||| ||||||| |||||| |||||| Sbjct 2091126 GGAGACTT--GGGCAGAGCAAAACATGTTGGGGCTCAAGATCACCTTCTTTGCACTGATG 2091183 Query 5144 GATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCA 5203 ||||||||||| ||||| |||||||||||||| | ||| | |||||||||||||||| Sbjct 2091184 GATGGAAAGGTCTATGACATCACAGAGTGGGCAGAATGGTAATGTGTGGGAATCTCCCCG 2091243 Query 5204 GATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGG 5253 ||||||||||||||||| ||| ||||| |||||| || ||||| ||||| Sbjct 2091244 GATACCCACAGAGTCCCCTATTACATCTCATTTGTCTCTCGGATCCCAGG 2091293 >seq72909 Length=15348459 Score = 302 bits (334), Expect = 4e-78 Identities = 242/289 (84%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | | |||||| ||||||||||||||||| |||||||||| Sbjct 4048578 CAATGAATACTATGATGTGTAGTCAATGCCAAGGAAAGCATAGGAGGTTCGAAATGGACC 4048519 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||| Sbjct 4048518 GGGAACCTAAGAGTGCCAGACACAGTGCTGAGTGTAATAGGCTGCATCCTCCTGAGGA-- 4048461 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 |||||||||||| |||||||||||||||| |||| ||||||||||| || ||||||| Sbjct 4048460 --GACTTTTGGGCAAAGTCAAGCATGTTGGGGCTCAGGATCACCTACTTCGCACTGATGG 4048403 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 || ||||||| || || | | |||||||||| || ||||||||| ||||||||| Sbjct 4048402 AT-GAAAGGTTTAAGACGT--CGGAGTGGGCTGCCTGTGGACGTGTGGGACTCTCCCCAG 4048346 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGG 5253 ||||| ||||| || | ||||||| ||| ||| | ||||| ||||| Sbjct 4048345 ATACCTGCAGAGCTCCCTGTCACATCTCATCTGGCCCTCGGATCCCAGG 4048297 >seq72697 Length=8563112 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 7573810 AGGAGGTTTGAAATGGACCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 7573869 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 7573870 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATC 7573929 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 7573930 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 7573972 Score = 125 bits (138), Expect = 6e-25 Identities = 84/94 (89%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||| |||||||| ||||||||||| |||||||||||||||||||| || |||| Sbjct 7574362 CAGAGTGGGCAGGATGCCAACGTGTGGGAATTTCCCCAGATACCCACAGAGTTCCCTATC 7574421 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| ||||||| || ||||| ||||| ||||| Sbjct 7574422 ACATCTCATTTGGCTCTCGGATTCCAGGCACCAG 7574455 >seq72298 Length=8293739 Score = 161 bits (178), Expect = 8e-36 Identities = 162/206 (79%), Gaps = 11/206 (5%) Strand=Plus/Plus Query 4977 TGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG- 5035 ||||| | | |||||||| ||||||| |||| |||||||||||| ||||| ||| Sbjct 8276878 TGATGCGTAGTCGATGCCAAGGAAAGCTTAGG---TTTGAAATGGAC--GGAACTGAAGG 8276932 Query 5036 ---AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTT 5092 |||||||| | ||| | |||||| | |||||| ||||||||||||||| ||||| Sbjct 8276933 AGGAGTGCCAGGTCCTGCG-TGAGTGCCACAGGCTGAGTCCTGCTGAGGAAGGAGACTTC 8276991 Query 5093 TGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAG 5152 ||||||||||| ||| |||| |||||||| ||||||| |||||| ||| || ||||| Sbjct 8276992 TGGGCAGAGTCGAGCGTGTT-GGCCTCAAGATCACCTGCTTTGCACTGCCGGCCAGAAAG 8277050 Query 5153 GTGTATGATATCACAGAGTGGGCTGG 5178 || |||| || ||||||||||||| Sbjct 8277051 GTCCATGACATTCCAGAGTGGGCTGG 8277076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40177393941520