Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq23 365 4e-97 seq2 361 4e-96 seq28 360 2e-95 seq101 356 2e-94 seq19 356 2e-94 seq84 351 8e-93 seq148 340 1e-89 seq42 331 7e-87 seq73 253 2e-63 >seq23 Length=27621139 Score = 365 bits (404), Expect = 4e-97 Identities = 244/272 (90%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 23203110 ATGTATAGTCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACTGGGAACCTAAGAGT 23203169 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| Sbjct 23203170 GCCAGATACTGTGCCGAGTGTAACAGGCTGCATCCTGCTGAGGAAGTAGACTTTTGGGCA 23203229 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||| || ||| Sbjct 23203230 GAGTCAAGCATGTTGGGGCTCAAGATCACTTACTTTGCACTGATGGATGGAAAAGTCTAT 23203289 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || |||||||||||||||||||| || |||||||||||||| ||||||||||||||| | Sbjct 23203290 GACATCACAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCTCCAGATACCCACAGAATT 23203349 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||||||||||||| || | ||| || Sbjct 23203350 CCCTATCACATCTCATTTGGCTCTCAGATCCC 23203381 >seq2 Length=46765855 Score = 361 bits (400), Expect = 4e-96 Identities = 238/263 (90%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || ||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 30865028 ATGTGTAGTTGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACCGGGAATCTAAGAGT 30865087 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 30865088 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGACTTTGGGGCA 30865147 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||| | ||||||||||| ||||| |||| | |||||| ||||||||||||||||| ||| Sbjct 30865148 GAGGCAAGCATGTTGGGGCTCAAGATCATTTGCTTTGCACTGATGGATGGAAAGGTCTAT 30865207 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||| |||||||||| |||||| ||||||||||||||||| Sbjct 30865208 GACATCACAGAGTGGGCTGGATATCAGCGTGTGGTAATCTCTCCAGATACCCACAGAGTT 30865267 Query 5234 CCTTGTCACATCTCATTTGGTTC 5256 || | ||||||||||||||| || Sbjct 30865268 CCCTATCACATCTCATTTGGCTC 30865290 >seq28 Length=27223524 Score = 360 bits (398), Expect = 2e-95 Identities = 237/262 (90%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 5004 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACT 5063 ||||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||||| Sbjct 13809896 GATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACCAGGAATCTAAGAGTGCTAGATACT 13809955 Query 5064 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCA 5123 || |||||| |||||||||||||||| |||||||||| ||||||||||||||||| |||| Sbjct 13809956 GTACTGAGTATAATAGGCTGCATCCTTCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCA 13810015 Query 5124 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 13810016 TGTTGGGGCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 13810075 Query 5184 AGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACA 5243 ||||||||||||| || ||||||||||||| ||||||||||||||||| || | ||||| Sbjct 13810076 AGTGGGCTGGATGTCAATGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCCTATCACA 13810135 Query 5244 TCTCATTTGGTTCACGGATGCC 5265 |||||||||| || |||| || Sbjct 13810136 TCTCATTTGGCTCTTGGATCCC 13810157 >seq101 Length=7631404 Score = 356 bits (394), Expect = 2e-94 Identities = 245/275 (89%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 846897 ATGTGTAGTCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 846956 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| Sbjct 846957 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGAC--TTGGGCA 847014 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||| || Sbjct 847015 GAGTCAAGCATGTTGGGGCTCAAGATCACTTACTTTGCGCTGATGGATGGAAAGGCCTAC 847074 Query 5174 GATATCA---CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGA 5230 || |||| ||||||||||||| || || | |||||||||||| |||| |||||||||| Sbjct 847075 GACATCAGCCCAGAGTGGGCTGGGTGTCAACATGTGGGAATCTCTCCAGGTACCCACAGA 847134 Query 5231 GTCCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || || |||||||||||| |||| || ||||| || Sbjct 847135 GTTCCCTGTCACATCTCACTTGGCTCCCGGATCCC 847169 >seq19 Length=32701575 Score = 356 bits (394), Expect = 2e-94 Identities = 242/272 (89%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || ||||||| ||||||||||||| ||||||||||||| || ||||||||||| Sbjct 6074042 ATGTGTAGTTGATGCCAAGGAAAGCATAGGAAGTTTGAAATGGACTGGAAACCTAAGAGT 6073983 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 6073982 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGAGACTTTTGGGCA 6073923 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||| ||||| ||||| |||||||| |||||||||||||| || ||| Sbjct 6073922 GAGTCAAGCATGTTGGGGCTCAAGATCACTTACTTTGCACTGATGGATGGAAAAGTCTAT 6073863 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||| |||| || | ||||||||||| ||||||||||||||||| Sbjct 6073862 GACATCACAGAGTGGGCTAGATGTCAACATGTGGGAATCTTTCCAGATACCCACAGAGTT 6073803 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 | | ||||||||||||||| || | ||| || Sbjct 6073802 CTCTATCACATCTCATTTGGCTCTCAGATCCC 6073771 >seq84 Length=11570013 Score = 351 bits (388), Expect = 8e-93 Identities = 241/272 (89%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||| || |||||||| |||||||||||||||||||||||||||| || ||| | |||| Sbjct 8469980 ATGTATAGTCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACCAGGGACCCAGGAGT 8469921 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||| Sbjct 8469920 GCCAGATACTGTGCTGAGTATAATAGGCTGCATCCTGCTGAGCAAGGAGACTTTTGGGCA 8469861 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||| ||||| |||||||||||||| |||||||||| |||||| ||| Sbjct 8469860 GAGTCAAGCATGTTGGGGCTCAAGATCACCTACTTTGCACTGATGGATGTAAAGGTCTAT 8469801 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || || |||||||||||||||| || ||||||||| |||| ||||||||||||||||| Sbjct 8469800 GACATTGCAGAGTGGGCTGGATGTCAACGTGTGGGAGTCTCTCCAGATACCCACAGAGTT 8469741 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | ||||| ||||||||| || ||||| || Sbjct 8469740 CCCTATCACACCTCATTTGGCTCTCGGATCCC 8469709 >seq148 Length=4887613 Score = 340 bits (376), Expect = 1e-89 Identities = 241/272 (89%), Gaps = 3/272 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAA-CCTAAGAG 5052 ||||| || |||||| ||||||||||||||||||||||| ||| ||||| |||||||| Sbjct 2762614 ATGTGTAGTCGATGCTGAGGAAAGCATAGGAGGTTTGAAATAGACTGGGAAACCTAAGAG 2762555 Query 5053 TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGC 5112 |||||||||| ||||||||||||||||| | ||||||||||||||||| ||||||||||| Sbjct 2762554 TGCCAGATACAGTGCTGAGTGTAATAGGTTTCATCCTGCTGAGGAAGGAGACTTTTGGGC 2762495 Query 5113 AGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 |||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||||| || Sbjct 2762494 AGAGTCAAGCATGTTGGGGCTCAAGATCACTTACTTTGCACTGATGGATGGAAAGGTCTA 2762435 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAG-AG 5231 ||| |||||||||||||||||||| || ||||||||||||| |||||||||||||| | Sbjct 2762434 TGACATCACAGAGTGGGCTGGATGTCAATGTGTGGGAATCTCTCCAGATACCCACAGAAT 2762375 Query 5232 TCCCT-TGTCACATCTCATTTGGTTCACGGAT 5262 ||||| | |||||||||||||| || | ||| Sbjct 2762374 TCCCTATCACACATCTCATTTGGCTCTCAGAT 2762343 >seq42 Length=20331017 Score = 331 bits (366), Expect = 7e-87 Identities = 237/272 (87%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || |||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 7800255 ATGTGTAGTCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACTGGGAACCTAAGAGT 7800314 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||| |||||| ||||||||| ||||||||||||||||||| |||||| ||||| Sbjct 7800315 GCCAGATACTCTGCTGAATGTAATAGGGTGCATCCTGCTGAGGAAGGAGACTTTGGGGCA 7800374 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||| | ||||||||||| ||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 7800375 GAGGCAAGCATGTTGGGGCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTCTAT 7800434 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 | |||||||||||||| |||| || | |||||||||||| |||| |||| |||||| Sbjct 7800435 GGCATCACAGAGTGGGCCAGATGTCAACATGTGGGAATCTCTCCAGGTACC--CAGAGTT 7800492 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 || | |||||| |||| || || ||||| || Sbjct 7800493 CCCTATCACATTTCATCTGACTCCCGGATCCC 7800524 >seq73 Length=13357033 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12193625 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 12193684 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||| Sbjct 12193685 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATC 12193744 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || |||||||| |||||||||||||| || ||||| ||||||| Sbjct 12193745 ACTTACTTTGCACTGATGGATGGAAAAGTCTATGACATCACAG 12193787 Score = 113 bits (124), Expect = 4e-21 Identities = 76/85 (89%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| || |||||||||||||| ||||||||||||||||| || | || Sbjct 12194158 CAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCCTATC 12194217 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 ||||||||||||| || ||||| || Sbjct 12194218 ACATCTCATTTGGCTCTCGGATCCC 12194242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40116491316972