Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq2 398 6e-107 seq23 396 2e-106 seq19 389 3e-104 seq28 383 1e-102 seq101 379 2e-101 seq84 379 2e-101 seq148 369 3e-98 seq42 363 1e-96 seq73 259 4e-65 >seq2 Length=46765855 Score = 398 bits (440), Expect = 6e-107 Identities = 275/310 (89%), Gaps = 1/310 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | ||||||| |||||||||||||||||||||||||||| Sbjct 30865014 CAATGAATACCATGATGTGTAGTTGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACC 30865073 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30865074 GGGAATCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 30865133 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||| |||||||| ||||||||||||| ||||| |||| | |||||| ||||||| Sbjct 30865134 GAGACTTTGGGGCAGAGGCAAGCATGTTGGGGCTCAAGATCATTTGCTTTGCACTGATGG 30865193 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| ||||| ||||||||||||||||||| |||||||||| |||||| |||| Sbjct 30865194 ATGGAAAGGTCTATGACATCACAGAGTGGGCTGGATATCAGCGTGTGGTAATCTCTCCAG 30865253 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACC 5264 ||||||||||||| || ||||||||| ||||||| || ||| ||||| ||||| | | Sbjct 30865254 ATACCCACAGAGTTCCCTATCACATCTCATTTGGCTCTTCGATCCCAGGCACCAGTGGTC 30865313 Query 5265 AG-AGAGAGG 5273 || ||||||| Sbjct 30865314 AGCAGAGAGG 30865323 >seq23 Length=27621139 Score = 396 bits (438), Expect = 2e-106 Identities = 274/309 (89%), Gaps = 1/309 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| || ||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct 23203096 CAATGAACACTATGATGTATAGTCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACT 23203155 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 23203156 GGGAACCTAAGAGTGCCAGATACTGTGCCGAGTGTAACAGGCTGCATCCTGCTGAGGAAG 23203215 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 ||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct 23203216 TAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATCACTTACTTTGCACTGATGG 23203275 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||||||| || ||||| |||||||||||||||||||| || |||||||||||||| |||| Sbjct 23203276 ATGGAAAAGTCTATGACATCACAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCTCCAG 23203335 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACC 5264 ||||||||||| | || ||||||||| ||||||| || | ||| ||||| ||||| | | Sbjct 23203336 ATACCCACAGAATTCCCTATCACATCTCATTTGGCTCTCAGATCCCAGGCACCAGTGGTC 23203395 Query 5265 A-GAGAGAG 5272 | ||||||| Sbjct 23203396 AGGAGAGAG 23203404 >seq19 Length=32701575 Score = 389 bits (430), Expect = 3e-104 Identities = 263/295 (89%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | ||||||| ||||||||||||| ||||||||||||| Sbjct 6074056 CAATGAATACTATGATGTGTAGTTGATGCCAAGGAAAGCATAGGAAGTTTGAAATGGACT 6073997 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6073996 GGAAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 6073937 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||||||||||||||||||||| ||||| ||||| |||||||| ||||||| Sbjct 6073936 GAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATCACTTACTTTGCACTGATGG 6073877 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||||||| || ||||| ||||||||||||||| |||| || | ||||||||||| |||| Sbjct 6073876 ATGGAAAAGTCTATGACATCACAGAGTGGGCTAGATGTCAACATGTGGGAATCTTTCCAG 6073817 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||||||| | ||||||||| ||||||| || | ||| ||||| ||||| Sbjct 6073816 ATACCCACAGAGTTCTCTATCACATCTCATTTGGCTCTCAGATCCCAGGCACCAG 6073762 >seq28 Length=27223524 Score = 383 bits (424), Expect = 1e-102 Identities = 262/295 (89%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||| ||||||| |||||||||||||||||||||||||||| Sbjct 13809872 CAATGAATACTGCGATGTGTCGTTGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACC 13809931 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||| |||||||||| ||||||||| |||||| |||||||||||||||| ||||||||| Sbjct 13809932 AGGAATCTAAGAGTGCTAGATACTGTACTGAGTATAATAGGCTGCATCCTTCTGAGGAAG 13809991 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct 13809992 GAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATCACCTACTTTGCACTGATGG 13810051 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| ||||| |||||||||||||||||||| || ||||||||||||| |||| Sbjct 13810052 ATGGAAAGGTCTATGACATCACAGAGTGGGCTGGATGTCAATGTGTGGGAATCTCTCCAG 13810111 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||||||| || ||||||||| ||||||| || |||| ||||| ||||| Sbjct 13810112 ATACCCACAGAGTTCCCTATCACATCTCATTTGGCTCTTGGATCCCAGGCACCAG 13810166 >seq101 Length=7631404 Score = 379 bits (420), Expect = 2e-101 Identities = 264/298 (89%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | |||||||| |||||||||||||||||||||||||||| Sbjct 846883 CAATGAATACTATGATGTGTAGTCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACC 846942 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 846943 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAG 847002 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||| |||||||||||||||||||||||| ||||| ||||| |||||||||||||||| Sbjct 847003 GAGAC--TTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATCACTTACTTTGCGCTGATGG 847060 Query 5145 ATGGAAAGGTGTATGATATCA---CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCC 5201 ||||||||| || || |||| ||||||||||||| || || | |||||||||||| | Sbjct 847061 ATGGAAAGGCCTACGACATCAGCCCAGAGTGGGCTGGGTGTCAACATGTGGGAATCTCTC 847120 Query 5202 CAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||| |||||||||||| || | ||||||| || |||| || ||||| ||||| ||||| Sbjct 847121 CAGGTACCCACAGAGTTCCCTGTCACATCTCACTTGGCTCCCGGATCCCAGGCACCAG 847178 >seq84 Length=11570013 Score = 379 bits (420), Expect = 2e-101 Identities = 261/295 (88%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| || ||||||| | |||||||| |||||||||||||||||||||||||||| Sbjct 8469994 CAATGAACACTATGATGTATAGTCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACC 8469935 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 || ||| | ||||||||||||||||||||||| |||||||||||||||||||||| ||| Sbjct 8469934 AGGGACCCAGGAGTGCCAGATACTGTGCTGAGTATAATAGGCTGCATCCTGCTGAGCAAG 8469875 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||| Sbjct 8469874 GAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATCACCTACTTTGCACTGATGG 8469815 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||| |||||| ||||| || |||||||||||||||| || ||||||||| |||| |||| Sbjct 8469814 ATGTAAAGGTCTATGACATTGCAGAGTGGGCTGGATGTCAACGTGTGGGAGTCTCTCCAG 8469755 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||||||| || ||||||| | ||||||| || ||||| ||||| ||||| Sbjct 8469754 ATACCCACAGAGTTCCCTATCACACCTCATTTGGCTCTCGGATCCCAGGCACCAG 8469700 >seq148 Length=4887613 Score = 369 bits (408), Expect = 3e-98 Identities = 262/298 (88%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | |||||| ||||||||||||||||||||||| ||| Sbjct 2762628 CAATGAATACTATGATGTGTAGTCGATGCTGAGGAAAGCATAGGAGGTTTGAAATAGACT 2762569 Query 5025 GGGAA-CCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAA 5083 ||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||||| Sbjct 2762568 GGGAAACCTAAGAGTGCCAGATACAGTGCTGAGTGTAATAGGTTTCATCCTGCTGAGGAA 2762509 Query 5084 GGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATG 5143 || ||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||| Sbjct 2762508 GGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATCACTTACTTTGCACTGATG 2762449 Query 5144 GATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCA 5203 ||||||||||| ||||| |||||||||||||||||||| || ||||||||||||| ||| Sbjct 2762448 GATGGAAAGGTCTATGACATCACAGAGTGGGCTGGATGTCAATGTGTGGGAATCTCTCCA 2762389 Query 5204 GATACCCACAGAGTCCCTTAT--CACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||||||||| | || ||| |||||| ||||||| || | ||| |||| ||||| Sbjct 2762388 GATACCCACAGAATTCCCTATCACACATCTCATTTGGCTCTCAGATCTCAGGCACCAG 2762331 >seq42 Length=20331017 Score = 363 bits (402), Expect = 1e-96 Identities = 258/295 (87%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct 7800241 CAATGAATACTATGATGTGTAGTCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACT 7800300 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| Sbjct 7800301 GGGAACCTAAGAGTGCCAGATACTCTGCTGAATGTAATAGGGTGCATCCTGCTGAGGAAG 7800360 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||| |||||||| ||||||||||||| ||||| |||||||||||||| ||||||| Sbjct 7800361 GAGACTTTGGGGCAGAGGCAAGCATGTTGGGGCTCAAGATCACCTACTTTGCACTGATGG 7800420 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| |||| |||||||||||||| |||| || | |||||||||||| |||| Sbjct 7800421 ATGGAAAGGTCTATGGCATCACAGAGTGGGCCAGATGTCAACATGTGGGAATCTCTCCAG 7800480 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||| |||||| || |||||||| ||| || || ||||| ||||| ||||| Sbjct 7800481 GTACC--CAGAGTTCCCTATCACATTTCATCTGACTCCCGGATCCCAGGCACCAG 7800533 >seq73 Length=13357033 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 12193625 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 12193684 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 12193685 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGGCTCAAGATC 12193744 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||| |||||||||||||| || ||||| ||||||| Sbjct 12193745 ACTTACTTTGCACTGATGGATGGAAAAGTCTATGACATCACAG 12193787 Score = 120 bits (132), Expect = 2e-23 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| || |||||||||||||| ||||||||||||||||| || |||| Sbjct 12194158 CAGAGTGGGCTGGATGTCAACGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCCTATC 12194217 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| ||||||| || ||||| ||| | ||||| Sbjct 12194218 ACATCTCATTTGGCTCTCGGATCCCAAGCACCAG 12194251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40209286901896