Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq178 250 2e-62
>seq178
Length=4226165
Score = 250 bits (276), Expect = 2e-62
Identities = 153/163 (94%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 285219 AGGAGGTTTGAAATGGACCGGGAACCTAAAAGTGCCAGATACTGTGCTGAGTGTAATAGG 285160
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 285159 CTGCACCCTGCTGAGGAAGGAGACTTTTGGGCAGAATCAAGCATGTTGGGCCTCAAGATT 285100
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 285099 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 285057
Score = 122 bits (134), Expect = 7e-24
Identities = 78/85 (92%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
|||||||||||||||||||||| || |||||||||||||||||||||||||| || | ||
Sbjct 284969 CAGAGTGGGCTGGATGCCAGCGCGTTGGAATCTCCCCAGATACCCACAGAGTTCCCTATC 284910
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
|||||||||||||||| ||||| ||
Sbjct 284909 ACATCTCATTTGGTTCTCGGATCCC 284885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40112766022644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |