Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq178 250 2e-62 >seq178 Length=4226165 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 285219 AGGAGGTTTGAAATGGACCGGGAACCTAAAAGTGCCAGATACTGTGCTGAGTGTAATAGG 285160 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| || Sbjct 285159 CTGCACCCTGCTGAGGAAGGAGACTTTTGGGCAGAATCAAGCATGTTGGGCCTCAAGATT 285100 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 285099 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 285057 Score = 122 bits (134), Expect = 7e-24 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||| || |||||||||||||||||||||||||| || | || Sbjct 284969 CAGAGTGGGCTGGATGCCAGCGCGTTGGAATCTCCCCAGATACCCACAGAGTTCCCTATC 284910 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||||| || Sbjct 284909 ACATCTCATTTGGTTCTCGGATCCC 284885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40112766022644