Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_003678.1
Length=12602
Score E
Sequences producing significant alignments: (Bits) Value
seq178 253 2e-63
>seq178
Length=4226165
Score = 253 bits (280), Expect = 2e-63
Identities = 154/163 (94%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 285219 AGGAGGTTTGAAATGGACCGGGAACCTAAAAGTGCCAGATACTGTGCTGAGTGTAATAGG 285160
Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125
||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| ||
Sbjct 285159 CTGCACCCTGCTGAGGAAGGAGACTTTTGGGCAGAATCAAGCATGTTGGGCCTCAAGATT 285100
Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168
||||||||||| ||||||||||||||||| ||||| |||||||
Sbjct 285099 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 285057
Score = 138 bits (152), Expect = 9e-29
Identities = 87/94 (93%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225
|||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||
Sbjct 284969 CAGAGTGGGCTGGATGCCAGCGCGTTGGAATCTCCCCAGATACCCACAGAGTTCCCTATC 284910
Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259
||||| |||||||||| ||||| |||||||||||
Sbjct 284909 ACATCTCATTTGGTTCTCGGATCCCAGGTACCAG 284876
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40205552990392
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |