Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_024296.1
Length=8914
Score E
Sequences producing significant alignments: (Bits) Value
seq625 508 3e-140
>seq625
Length=225304
Score = 508 bits (562), Expect = 3e-140
Identities = 731/1024 (71%), Gaps = 10/1024 (1%)
Strand=Plus/Plus
Query 153 GGCACTGACCCCCACCCAGGAATTGGTGATGAGAGAGACATTAAGAAAAATGCCTTAGCA 212
|| |||||||||||||| || || || ||||||| |||| || |||||||| | ||
Sbjct 55171 GGAACTGACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCT 55230
Query 213 TTCCTTGATCCTGGCCGCCGAGAGAAGTTCCACAGTGTGACCCCAAGCTTGGTATTTCTG 272
|| | || | | || |||| || |||| ||| || || ||| | || ||||||
Sbjct 55231 TTATTAGAAGCAGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTG 55290
Query 273 TGTCTACTTATTCCAGGCTTACATGGAGCTTTACTCTATGGTGGTGTTCCTCGTGAATCT 332
||||| | ||||| || | || | || | | ||||| || || ||||| || ||
Sbjct 55291 TGTCTTTTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCC 55350
Query 333 TACCTATCAACAGTGGTTGATCGTGGAGGGGAGCAAATC---ATTAAGGCCGGGAAATTC 389
||||| |||| ||| || ||| || ||| || || || | | || |
Sbjct 55351 TACCTCACAACTCCTGTTA--CGAA-AGGTGATCAAGTCCTCATCAAAACAGCAAAGCTT 55407
Query 390 TATGGAGAAAGGCTTGTTGATCGGGAGTTGACAGAACTTGAAGTTTCTTCGATTTTCAAT 449
|||||||||| |||||||| || ||| | ||||| ||||| || || || |||||
Sbjct 55408 TATGGAGAAAAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAAC 55467
Query 450 CATTGCTGTTCTTTATTGATTGGTGTGGTGATTGGGTCTTCTGCCAAAATCAAAGCAGGT 509
||||||||||| | |||| || ||||| ||||| || || || ||||| | |||||||
Sbjct 55468 CATTGCTGTTCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGT 55527
Query 510 GCAGAGCAAATTAAGAAACGCTTTAAGACATTAATGGCATCCCTCAACAGGCCTGCTCAC 569
|| || ||||| | ||| | |||||||| ||||||| || | |||||||| || ||
Sbjct 55528 GCGGAACAAATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCAT 55587
Query 570 GGCGAGACAGCGACACTGCTGCAGATGTTTAATCCTCATGAAGCCATTGACTGGATTAAT 629
|| || || || || || || |||| || || ||||| ||||| ||||||||||| ||
Sbjct 55588 GGAGACACTGCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAAC 55647
Query 630 GGTCAGCCATGGGTTGGCTCATTGGTTTTATCATTGATTACCACAGATTTTGAGTCTCCC 689
|| ||||||||||| || ||||| |||| | | || ||||||||||| || |||
Sbjct 55648 TCACAACCATGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCC 55707
Query 690 GGGAAGGAATTCATGGATCAAATAAAACTTGTTGCAAGTTATGCACAAATGACGACATAT 749
|| || ||||||||||| || || | ||| || || || | ||| || |||||||||||
Sbjct 55708 GGCAAAGAATTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATAC 55767
Query 750 ACTACTATCAAGGAATACCTTAGTGAGTGCATGGATGCAACACTTACCATTCCAGCAGTG 809
|| || ||||| |||||||| | ||||||||||||||| ||| | | ||||| || ||
Sbjct 55768 ACCACAATCAAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTT 55827
Query 810 GCCCACGAAATCAAGGATTTTATTAAGGTTTCATCTGATCTTAAAGCGGAACATGGAGAA 869
|| ||||| ||||| ||| | | | | ||| | || || || || ||||| ||
Sbjct 55828 GCTGGGGAAATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAG 55887
Query 870 CTCTTCAAGTTCCTTGGTGCCATACGCCATCCAGACGCCATCAAGCTGGCTCCGCGGAAC 929
| ||||| | ||| || ||||| || ||||||||||| || ||||| || || |||| |
Sbjct 55888 ATTTTCAAATACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGC 55947
Query 930 TTCCCGAACTTGGCGTCAGCAGCATTTTACTGGAGCAAAAAGGAGAATCCCACCATGTCC 989
|| || || | || |||||||| ||||| ||||| || ||||||||||| || |||||
Sbjct 55948 TTTCCTAATCTTGCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCA 56007
Query 990 GGGTATCGTGCATCAACCATTCAGCCTGGGTCTACCGTTAAGGAAGCTCAATTGGCAAGA 1049
|| ||| | || || || || ||||| ||| || || |||||||| | || ||
Sbjct 56008 GGATATAGAGCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGCTCGA 56067
Query 1050 TACAGACGACGTGAGGTATCTCGCGGAGAGGATGGTGTCCATCTTTCAGCCGAGATAGCT 1109
||||| | |||||| |||| || || |||||||| ||| | ||| || || ||
Sbjct 56068 TACAGGAGGCGTGAGATATCCCGAGGGGAGGATGGAAGTCATATCCCAGATGAAATTGCC 56127
Query 1110 GAGATAATGAGGATGATTGGAGTTACCGGACTTCAACCATAA-TATGAACATACCAATaa 1168
|||| |||| ||| ||||| || || || || | || || ||||||||| | | ||
Sbjct 56128 CAGATCATGAAGATAATTGGTGTGACAGG-CT--ATGCAAAACCATGAACATAACCACAA 56184
Query 1169 aaaa 1172
||||
Sbjct 56185 AAAA 56188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28405610333336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |