Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_024296.1 Length=8914 Score E Sequences producing significant alignments: (Bits) Value seq625 508 3e-140 >seq625 Length=225304 Score = 508 bits (562), Expect = 3e-140 Identities = 731/1024 (71%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 153 GGCACTGACCCCCACCCAGGAATTGGTGATGAGAGAGACATTAAGAAAAATGCCTTAGCA 212 || |||||||||||||| || || || ||||||| |||| || |||||||| | || Sbjct 55171 GGAACTGACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCT 55230 Query 213 TTCCTTGATCCTGGCCGCCGAGAGAAGTTCCACAGTGTGACCCCAAGCTTGGTATTTCTG 272 || | || | | || |||| || |||| ||| || || ||| | || |||||| Sbjct 55231 TTATTAGAAGCAGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTG 55290 Query 273 TGTCTACTTATTCCAGGCTTACATGGAGCTTTACTCTATGGTGGTGTTCCTCGTGAATCT 332 ||||| | ||||| || | || | || | | ||||| || || ||||| || || Sbjct 55291 TGTCTTTTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCC 55350 Query 333 TACCTATCAACAGTGGTTGATCGTGGAGGGGAGCAAATC---ATTAAGGCCGGGAAATTC 389 ||||| |||| ||| || ||| || ||| || || || | | || | Sbjct 55351 TACCTCACAACTCCTGTTA--CGAA-AGGTGATCAAGTCCTCATCAAAACAGCAAAGCTT 55407 Query 390 TATGGAGAAAGGCTTGTTGATCGGGAGTTGACAGAACTTGAAGTTTCTTCGATTTTCAAT 449 |||||||||| |||||||| || ||| | ||||| ||||| || || || ||||| Sbjct 55408 TATGGAGAAAAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAAC 55467 Query 450 CATTGCTGTTCTTTATTGATTGGTGTGGTGATTGGGTCTTCTGCCAAAATCAAAGCAGGT 509 ||||||||||| | |||| || ||||| ||||| || || || ||||| | ||||||| Sbjct 55468 CATTGCTGTTCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGT 55527 Query 510 GCAGAGCAAATTAAGAAACGCTTTAAGACATTAATGGCATCCCTCAACAGGCCTGCTCAC 569 || || ||||| | ||| | |||||||| ||||||| || | |||||||| || || Sbjct 55528 GCGGAACAAATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCAT 55587 Query 570 GGCGAGACAGCGACACTGCTGCAGATGTTTAATCCTCATGAAGCCATTGACTGGATTAAT 629 || || || || || || || |||| || || ||||| ||||| ||||||||||| || Sbjct 55588 GGAGACACTGCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAAC 55647 Query 630 GGTCAGCCATGGGTTGGCTCATTGGTTTTATCATTGATTACCACAGATTTTGAGTCTCCC 689 || ||||||||||| || ||||| |||| | | || ||||||||||| || ||| Sbjct 55648 TCACAACCATGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCC 55707 Query 690 GGGAAGGAATTCATGGATCAAATAAAACTTGTTGCAAGTTATGCACAAATGACGACATAT 749 || || ||||||||||| || || | ||| || || || | ||| || ||||||||||| Sbjct 55708 GGCAAAGAATTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATAC 55767 Query 750 ACTACTATCAAGGAATACCTTAGTGAGTGCATGGATGCAACACTTACCATTCCAGCAGTG 809 || || ||||| |||||||| | ||||||||||||||| ||| | | ||||| || || Sbjct 55768 ACCACAATCAAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTT 55827 Query 810 GCCCACGAAATCAAGGATTTTATTAAGGTTTCATCTGATCTTAAAGCGGAACATGGAGAA 869 || ||||| ||||| ||| | | | | ||| | || || || || ||||| || Sbjct 55828 GCTGGGGAAATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAG 55887 Query 870 CTCTTCAAGTTCCTTGGTGCCATACGCCATCCAGACGCCATCAAGCTGGCTCCGCGGAAC 929 | ||||| | ||| || ||||| || ||||||||||| || ||||| || || |||| | Sbjct 55888 ATTTTCAAATACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGC 55947 Query 930 TTCCCGAACTTGGCGTCAGCAGCATTTTACTGGAGCAAAAAGGAGAATCCCACCATGTCC 989 || || || | || |||||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 55948 TTTCCTAATCTTGCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCA 56007 Query 990 GGGTATCGTGCATCAACCATTCAGCCTGGGTCTACCGTTAAGGAAGCTCAATTGGCAAGA 1049 || ||| | || || || || ||||| ||| || || |||||||| | || || Sbjct 56008 GGATATAGAGCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGCTCGA 56067 Query 1050 TACAGACGACGTGAGGTATCTCGCGGAGAGGATGGTGTCCATCTTTCAGCCGAGATAGCT 1109 ||||| | |||||| |||| || || |||||||| ||| | ||| || || || Sbjct 56068 TACAGGAGGCGTGAGATATCCCGAGGGGAGGATGGAAGTCATATCCCAGATGAAATTGCC 56127 Query 1110 GAGATAATGAGGATGATTGGAGTTACCGGACTTCAACCATAA-TATGAACATACCAATaa 1168 |||| |||| ||| ||||| || || || || | || || ||||||||| | | || Sbjct 56128 CAGATCATGAAGATAATTGGTGTGACAGG-CT--ATGCAAAACCATGAACATAACCACAA 56184 Query 1169 aaaa 1172 |||| Sbjct 56185 AAAA 56188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28405610333336