Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_030688.1
Length=8915
Score E
Sequences producing significant alignments: (Bits) Value
seq625 470 8e-129
>seq625
Length=225304
Score = 470 bits (520), Expect = 8e-129
Identities = 716/1015 (71%), Gaps = 6/1015 (1%)
Strand=Plus/Plus
Query 185 GACCCCCATCCCGGGATAGGAAACGAGAAGGACATCCACAAAAATGCAGTTGCACTTCTA 244
|||||||| ||||| ||||| | ||||| ||| | | ||||||| |||| | ||
Sbjct 55177 GACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCTTTATTA 55236
Query 245 GACCAATCCCGCAGAGAGCTTTACCACAGTGTCACTCCGAGTCTTGTCTTCTTGTGCTTG 304
|| | || ||| || |||||| ||| || ||||| || || || |||| |
Sbjct 55237 GAAGCAGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTGTGTCTT 55296
Query 305 CTCATCCCTGGACTACATTCTGCCTTGCTCTTTGCAGGTGTACAGCGGGAGTCATATTTG 364
| || ||| | || || ||||| || | | || ||| || | || ||||| || |
Sbjct 55297 TTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCCTACCTC 55356
Query 365 ACAACGCCAGTCAAGCAAGGAGAACGGTTAATTACTAAAACTGCCAACTTCTTCGGGGAG 424
||||| || || | | |||| || | | | | ||||| || || | | || ||
Sbjct 55357 ACAACTCCTGTTACGAAAGGTGATCAAGTCCTCATCAAAACAGCAAAGCTTTATGGAGAA 55416
Query 425 AAAACGATGGATCAAGAGTTGACAGAGCTTCAAATCTCCTCAATCTTCAATCACTGTTGT 484
||||| | |||| || ||| | || || || |||| || |||||||| || || |||
Sbjct 55417 AAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAACCATTGCTGT 55476
Query 485 TCGCTTCTTATTGGAGTGGTCATAGGCTCATCCGCAAAGATCAAAGCCGGGGCTGAACAA 544
|| || || || |||||||| || || ||||| || || || | ||| || || ||||||
Sbjct 55477 TCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGTGCGGAACAA 55536
Query 545 ATCAAAAAGAGGTTCAAAACCCTAATGGCATCAATCAATCGCCCAGGCCATGGAGAAACT 604
|| | ||||| || || || |||||||| ||||| || | || | |||||||| |||
Sbjct 55537 ATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCATGGAGACACT 55596
Query 605 GCCAACCTCCTCTCGGTTTTCAACCCCCATGAGGCTATTGATTGGATCAACGCTCAGCCA 664
|||| |||||| | |||||||| || || |||||||| ||||||||| | || |||
Sbjct 55597 GCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAACTCACAACCA 55656
Query 665 TGGGTCGGTTCGTTTGTACTTGCTTTATTAACTACTGACTTTGAAAGTCCCGGCAAGGAG 724
||||| ||||| | || || || | |||||||| || |||||| |||||||| ||
Sbjct 55657 TGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCCGGCAAAGAA 55716
Query 725 TTTATGGACCAGATCAAATTAGTAGCAGGATTTGCACAGATGACTACGTATACGACAATT 784
|| ||||| ||||||| | |||| || | ||||| |||||||| || || || |||||
Sbjct 55717 TTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATACACCACAATC 55776
Query 785 AAGGAGTATCTTAATGAGTGCATGGACGCCACACTAACAATTCCGGCTGTAGCACTTGAG 844
|| || || || |||||||||||||| || ||| ||| ||||| ||||| || ||
Sbjct 55777 AAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTTGCTGGGGAA 55836
Query 845 ATTAAAGAGTTTTTGGATACGACTGCAAAGCTTAAGGCGGAGCACGGGGACATGTTTAAG 904
||||| |||||| | ||||| | | || || ||||| || || || || || || ||
Sbjct 55837 ATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAGATTTTCAAA 55896
Query 905 TACTTAGGTGCCATTCGCCACTCCGATGCAATTAAACTTGCACCAAGGA-ATTTCCCAAA 963
||| | || ||||| || || | || || ||||| ||||| ||| ||| ||||| ||
Sbjct 55897 TACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGCTTTCCTAAT 55956
Query 964 CTTAGCATCAGCTGCTTTTTACTGGAGTAAGAAAGAAAATCCAACAATGGCTGGTTATCG 1023
||| || ||||| || ||||| ||||||||||| || ||||| || ||| | || ||| |
Sbjct 55957 CTT-GCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCAGGATATAG 56015
Query 1024 CGCGTCAACAATACAACCAGGATCTATCGTCAAGGAGGCCCAACTAGCACGATTTAGACG 1083
|| || |||||| || ||| |||| || || || || || ||||| |||| || |
Sbjct 56016 AGCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGCTCGATACAGGAG 56075
Query 1084 GCGAGAAATAACTCGTGGTGATGACGGCACCACAATGTCCC--CTGAGATAGCTGAGGTC 1141
||| || ||| | || || || || || | || |||| ||| || || || ||
Sbjct 56076 GCGTGAGATATCCCGAGGGGAGGATGGAA--GTCATATCCCAGATGAAATTGCCCAGATC 56133
Query 1142 ATGAAACTAATAGGTGTAACCGGATTCGCAAACTAATGAACATACGAATaaaaaa 1196
||||| |||| ||||| || || | ||||| ||||||||| | ||||||
Sbjct 56134 ATGAAGATAATTGGTGTGACAGGCTATGCAAAACCATGAACATAACCACAAAAAA 56188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28408809883948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |