Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_030688.1 Length=8915 Score E Sequences producing significant alignments: (Bits) Value seq625 470 8e-129 >seq625 Length=225304 Score = 470 bits (520), Expect = 8e-129 Identities = 716/1015 (71%), Gaps = 6/1015 (1%) Strand=Plus/Plus Query 185 GACCCCCATCCCGGGATAGGAAACGAGAAGGACATCCACAAAAATGCAGTTGCACTTCTA 244 |||||||| ||||| ||||| | ||||| ||| | | ||||||| |||| | || Sbjct 55177 GACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCTTTATTA 55236 Query 245 GACCAATCCCGCAGAGAGCTTTACCACAGTGTCACTCCGAGTCTTGTCTTCTTGTGCTTG 304 || | || ||| || |||||| ||| || ||||| || || || |||| | Sbjct 55237 GAAGCAGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTGTGTCTT 55296 Query 305 CTCATCCCTGGACTACATTCTGCCTTGCTCTTTGCAGGTGTACAGCGGGAGTCATATTTG 364 | || ||| | || || ||||| || | | || ||| || | || ||||| || | Sbjct 55297 TTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCCTACCTC 55356 Query 365 ACAACGCCAGTCAAGCAAGGAGAACGGTTAATTACTAAAACTGCCAACTTCTTCGGGGAG 424 ||||| || || | | |||| || | | | | ||||| || || | | || || Sbjct 55357 ACAACTCCTGTTACGAAAGGTGATCAAGTCCTCATCAAAACAGCAAAGCTTTATGGAGAA 55416 Query 425 AAAACGATGGATCAAGAGTTGACAGAGCTTCAAATCTCCTCAATCTTCAATCACTGTTGT 484 ||||| | |||| || ||| | || || || |||| || |||||||| || || ||| Sbjct 55417 AAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAACCATTGCTGT 55476 Query 485 TCGCTTCTTATTGGAGTGGTCATAGGCTCATCCGCAAAGATCAAAGCCGGGGCTGAACAA 544 || || || || |||||||| || || ||||| || || || | ||| || || |||||| Sbjct 55477 TCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGTGCGGAACAA 55536 Query 545 ATCAAAAAGAGGTTCAAAACCCTAATGGCATCAATCAATCGCCCAGGCCATGGAGAAACT 604 || | ||||| || || || |||||||| ||||| || | || | |||||||| ||| Sbjct 55537 ATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCATGGAGACACT 55596 Query 605 GCCAACCTCCTCTCGGTTTTCAACCCCCATGAGGCTATTGATTGGATCAACGCTCAGCCA 664 |||| |||||| | |||||||| || || |||||||| ||||||||| | || ||| Sbjct 55597 GCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAACTCACAACCA 55656 Query 665 TGGGTCGGTTCGTTTGTACTTGCTTTATTAACTACTGACTTTGAAAGTCCCGGCAAGGAG 724 ||||| ||||| | || || || | |||||||| || |||||| |||||||| || Sbjct 55657 TGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCCGGCAAAGAA 55716 Query 725 TTTATGGACCAGATCAAATTAGTAGCAGGATTTGCACAGATGACTACGTATACGACAATT 784 || ||||| ||||||| | |||| || | ||||| |||||||| || || || ||||| Sbjct 55717 TTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATACACCACAATC 55776 Query 785 AAGGAGTATCTTAATGAGTGCATGGACGCCACACTAACAATTCCGGCTGTAGCACTTGAG 844 || || || || |||||||||||||| || ||| ||| ||||| ||||| || || Sbjct 55777 AAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTTGCTGGGGAA 55836 Query 845 ATTAAAGAGTTTTTGGATACGACTGCAAAGCTTAAGGCGGAGCACGGGGACATGTTTAAG 904 ||||| |||||| | ||||| | | || || ||||| || || || || || || || Sbjct 55837 ATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAGATTTTCAAA 55896 Query 905 TACTTAGGTGCCATTCGCCACTCCGATGCAATTAAACTTGCACCAAGGA-ATTTCCCAAA 963 ||| | || ||||| || || | || || ||||| ||||| ||| ||| ||||| || Sbjct 55897 TACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGCTTTCCTAAT 55956 Query 964 CTTAGCATCAGCTGCTTTTTACTGGAGTAAGAAAGAAAATCCAACAATGGCTGGTTATCG 1023 ||| || ||||| || ||||| ||||||||||| || ||||| || ||| | || ||| | Sbjct 55957 CTT-GCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCAGGATATAG 56015 Query 1024 CGCGTCAACAATACAACCAGGATCTATCGTCAAGGAGGCCCAACTAGCACGATTTAGACG 1083 || || |||||| || ||| |||| || || || || || ||||| |||| || | Sbjct 56016 AGCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGCTCGATACAGGAG 56075 Query 1084 GCGAGAAATAACTCGTGGTGATGACGGCACCACAATGTCCC--CTGAGATAGCTGAGGTC 1141 ||| || ||| | || || || || || | || |||| ||| || || || || Sbjct 56076 GCGTGAGATATCCCGAGGGGAGGATGGAA--GTCATATCCCAGATGAAATTGCCCAGATC 56133 Query 1142 ATGAAACTAATAGGTGTAACCGGATTCGCAAACTAATGAACATACGAATaaaaaa 1196 ||||| |||| ||||| || || | ||||| ||||||||| | |||||| Sbjct 56134 ATGAAGATAATTGGTGTGACAGGCTATGCAAAACCATGAACATAACCACAAAAAA 56188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28408809883948