Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_030690.1
Length=8930
Score E
Sequences producing significant alignments: (Bits) Value
seq625 455 2e-124
>seq625
Length=225304
Score = 455 bits (504), Expect = 2e-124
Identities = 719/1024 (70%), Gaps = 10/1024 (1%)
Strand=Plus/Plus
Query 154 GGTACGGATCCCCATCCAGGAATAGGCGATGAAAGGGATATCAAGAAAAATGCTCTTGCA 213
|| || || ||||| || || ||||| ||||| | || | |||||||| ||||
Sbjct 55171 GGAACTGACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCT 55230
Query 214 TTTCTTGATCCATCTCGACGGGAGAAGTTCCACAGTGTCACACCAAGCCTGGTATTCTTG 273
|| | || || ||| || | || |||| ||| ||||| ||||| || || ||
Sbjct 55231 TTATTAGAAGCAGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTG 55290
Query 274 TGTTTATTGATTCCTGGGTTGCATGGGGCTTTATTATACGGTGGTGTGCCTCGTGAATCA 333
||| | || |||||| | | || | || | |||| || || || ||||| || ||
Sbjct 55291 TGTCTTTTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCC 55350
Query 334 TATCTTTCAACTGTTATTGATCGCGGGGGAGAGCAATTG---ATTAAAGTGGGTCGCTTT 390
|| || ||||| | || || || || ||| | || ||| | ||
Sbjct 55351 TACCTCACAACTCCTGTTA--CGAAAGGT-GATCAAGTCCTCATCAAAACAGCAAAGCTT 55407
Query 391 TACGGGGAAAAGCTGGTTGATAGAGAGCTCACTGAACTCGAAGTTTCCTCAATCTTCAAT 450
|| || ||||| |||||| | || | | ||||| ||||| || || ||||||||
Sbjct 55408 TATGGAGAAAAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAAC 55467
Query 451 CATTGTTGCTCGTTACTGATTGGTGTGGTGATTGGTTCTTCTGCAAAAATCAAGGCTGGC 510
||||| || || | ||||| || ||||| |||||||| || || ||||| | || ||
Sbjct 55468 CATTGCTGTTCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGT 55527
Query 511 GCTGAACAGATTAAAAAGAGATTCAAAACATTAATGGCATCACTCAACAGACCCTCTCAT 570
|| ||||| || | |||||||| || || ||||||| ||| | ||||| || | |||
Sbjct 55528 GCGGAACAAATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCAT 55587
Query 571 GGAGAAACTGCCACACTTCTTCAGATGTTTAATCCTCATGAAGCTATCGACTGGATTAAT 630
||||| |||||||| || || |||| || || ||||| |||||||| |||||||| ||
Sbjct 55588 GGAGACACTGCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAAC 55647
Query 631 GGTCAACCATGGGTTGGATCCTTAGTCTTATCTTTAATTACTACAGACTTTGAATCACCC 690
|||||||||||||| || | || ||||| | | |||||||| ||||||||||||
Sbjct 55648 TCACAACCATGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCC 55707
Query 691 GGGAAAGAATTCATGGATCAGATCAAGCTGGTTGCCAGTTATGCACAAATGACAACATAC 750
|| |||||||||||||| ||||||| || || || || | ||| || ||||| ||||||
Sbjct 55708 GGCAAAGAATTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATAC 55767
Query 751 ACTACAATCAAAGAGTACCTTAGTGAATGCATGGATGCAACACTAACGATTCCCGCAGTA 810
|| ||||||||||| ||||| | ||| ||||||||||| ||| ||| |||||| || ||
Sbjct 55768 ACCACAATCAAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTT 55827
Query 811 GCATATGAGATCAAGGAGTTCATTAAGACTTCGTCAGATCTTAAGAATGAACATGGAGAG 870
|| || || |||||||| | | ||| | || | || ||| || ||||| |||
Sbjct 55828 GCTGGGGAAATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAG 55887
Query 871 TTATTCAAGTACTTGGGTGCGATTAGGYATCCTGATGCAATCAAATTAGCTCCGCGAAAC 930
| ||||| ||| | || || || | |||| || || || || | || || || | |
Sbjct 55888 ATTTTCAAATACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGC 55947
Query 931 TTTCCAAATCTTGCGTCAGCTGCATTTTACTGGAGCAAAAAGGAGAACCCAACAATGTCT 990
||||| |||||||| ||||| || ||||| ||||| || |||||||| || || |||||
Sbjct 55948 TTTCCTAATCTTGCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCA 56007
Query 991 GGTTATCGAGCGTCGACTATACAACCAGGATCAAGTGTCAAAGAAGCACAGTTAGCAAGG 1050
|| ||| |||| || || ||| || ||| | | || |||||||| ||| |||| |
Sbjct 56008 GGATATAGAGCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGCTCGA 56067
Query 1051 TACAGACGTCGCGAGGTTTCGAGAGGAGAGGACGGACTACACCTTTCAGACGAGATTGCA 1110
||||| | || ||| | || |||| ||||| ||| || | |||| || |||||
Sbjct 56068 TACAGGAGGCGTGAGATATCCCGAGGGGAGGATGGAAGTCATATCCCAGATGAAATTGCC 56127
Query 1111 GATATAATGAGAATGATAGGAGTTACAGGACTTCAACCATAA-CATGAACATCTCTATAA 1169
| || |||| || || || || ||||| || | || || ||||||||| | | ||
Sbjct 56128 CAGATCATGAAGATAATTGGTGTGACAGG-CT--ATGCAAAACCATGAACATAACCACAA 56184
Query 1170 AAAA 1173
||||
Sbjct 56185 AAAA 56188
Lambda K H
0.634 0.408 0.913
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28456803143128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |