Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_030690.1 Length=8930 Score E Sequences producing significant alignments: (Bits) Value seq625 455 2e-124 >seq625 Length=225304 Score = 455 bits (504), Expect = 2e-124 Identities = 719/1024 (70%), Gaps = 10/1024 (1%) Strand=Plus/Plus Query 154 GGTACGGATCCCCATCCAGGAATAGGCGATGAAAGGGATATCAAGAAAAATGCTCTTGCA 213 || || || ||||| || || ||||| ||||| | || | |||||||| |||| Sbjct 55171 GGAACTGACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCT 55230 Query 214 TTTCTTGATCCATCTCGACGGGAGAAGTTCCACAGTGTCACACCAAGCCTGGTATTCTTG 273 || | || || ||| || | || |||| ||| ||||| ||||| || || || Sbjct 55231 TTATTAGAAGCAGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTG 55290 Query 274 TGTTTATTGATTCCTGGGTTGCATGGGGCTTTATTATACGGTGGTGTGCCTCGTGAATCA 333 ||| | || |||||| | | || | || | |||| || || || ||||| || || Sbjct 55291 TGTCTTTTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCC 55350 Query 334 TATCTTTCAACTGTTATTGATCGCGGGGGAGAGCAATTG---ATTAAAGTGGGTCGCTTT 390 || || ||||| | || || || || ||| | || ||| | || Sbjct 55351 TACCTCACAACTCCTGTTA--CGAAAGGT-GATCAAGTCCTCATCAAAACAGCAAAGCTT 55407 Query 391 TACGGGGAAAAGCTGGTTGATAGAGAGCTCACTGAACTCGAAGTTTCCTCAATCTTCAAT 450 || || ||||| |||||| | || | | ||||| ||||| || || |||||||| Sbjct 55408 TATGGAGAAAAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAAC 55467 Query 451 CATTGTTGCTCGTTACTGATTGGTGTGGTGATTGGTTCTTCTGCAAAAATCAAGGCTGGC 510 ||||| || || | ||||| || ||||| |||||||| || || ||||| | || || Sbjct 55468 CATTGCTGTTCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGT 55527 Query 511 GCTGAACAGATTAAAAAGAGATTCAAAACATTAATGGCATCACTCAACAGACCCTCTCAT 570 || ||||| || | |||||||| || || ||||||| ||| | ||||| || | ||| Sbjct 55528 GCGGAACAAATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCAT 55587 Query 571 GGAGAAACTGCCACACTTCTTCAGATGTTTAATCCTCATGAAGCTATCGACTGGATTAAT 630 ||||| |||||||| || || |||| || || ||||| |||||||| |||||||| || Sbjct 55588 GGAGACACTGCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAAC 55647 Query 631 GGTCAACCATGGGTTGGATCCTTAGTCTTATCTTTAATTACTACAGACTTTGAATCACCC 690 |||||||||||||| || | || ||||| | | |||||||| |||||||||||| Sbjct 55648 TCACAACCATGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCC 55707 Query 691 GGGAAAGAATTCATGGATCAGATCAAGCTGGTTGCCAGTTATGCACAAATGACAACATAC 750 || |||||||||||||| ||||||| || || || || | ||| || ||||| |||||| Sbjct 55708 GGCAAAGAATTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATAC 55767 Query 751 ACTACAATCAAAGAGTACCTTAGTGAATGCATGGATGCAACACTAACGATTCCCGCAGTA 810 || ||||||||||| ||||| | ||| ||||||||||| ||| ||| |||||| || || Sbjct 55768 ACCACAATCAAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTT 55827 Query 811 GCATATGAGATCAAGGAGTTCATTAAGACTTCGTCAGATCTTAAGAATGAACATGGAGAG 870 || || || |||||||| | | ||| | || | || ||| || ||||| ||| Sbjct 55828 GCTGGGGAAATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAG 55887 Query 871 TTATTCAAGTACTTGGGTGCGATTAGGYATCCTGATGCAATCAAATTAGCTCCGCGAAAC 930 | ||||| ||| | || || || | |||| || || || || | || || || | | Sbjct 55888 ATTTTCAAATACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGC 55947 Query 931 TTTCCAAATCTTGCGTCAGCTGCATTTTACTGGAGCAAAAAGGAGAACCCAACAATGTCT 990 ||||| |||||||| ||||| || ||||| ||||| || |||||||| || || ||||| Sbjct 55948 TTTCCTAATCTTGCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCA 56007 Query 991 GGTTATCGAGCGTCGACTATACAACCAGGATCAAGTGTCAAAGAAGCACAGTTAGCAAGG 1050 || ||| |||| || || ||| || ||| | | || |||||||| ||| |||| | Sbjct 56008 GGATATAGAGCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGCTCGA 56067 Query 1051 TACAGACGTCGCGAGGTTTCGAGAGGAGAGGACGGACTACACCTTTCAGACGAGATTGCA 1110 ||||| | || ||| | || |||| ||||| ||| || | |||| || ||||| Sbjct 56068 TACAGGAGGCGTGAGATATCCCGAGGGGAGGATGGAAGTCATATCCCAGATGAAATTGCC 56127 Query 1111 GATATAATGAGAATGATAGGAGTTACAGGACTTCAACCATAA-CATGAACATCTCTATAA 1169 | || |||| || || || || ||||| || | || || ||||||||| | | || Sbjct 56128 CAGATCATGAAGATAATTGGTGTGACAGG-CT--ATGCAAAACCATGAACATAACCACAA 56184 Query 1170 AAAA 1173 |||| Sbjct 56185 AAAA 56188 Lambda K H 0.634 0.408 0.913 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28456803143128