Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_030691.1 Length=8904 Score E Sequences producing significant alignments: (Bits) Value seq625 536 7e-149 >seq625 Length=225304 Score = 536 bits (594), Expect = 7e-149 Identities = 729/1015 (72%), Gaps = 4/1015 (0%) Strand=Plus/Plus Query 164 GATCCACATCCTGGCATCGGTGATGAGAAGGACATCAAAAAGAATGCTCTAGCTTTTCTT 223 || || || || ||||| || |||||||| ||| | || |||| | ||||| | Sbjct 55177 GACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCTTTATTA 55236 Query 224 GACCCAACACGTCGTGAAAAGTTTCATGGTGTGACTCCAAGTTTAATCTTTCTTTGCTTA 283 || || || || | | || || | ||| || || || || | ||||| || | Sbjct 55237 GAAGCAGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTGTGTCTT 55296 Query 284 TTAATTCCTGGGCTTCATGCGGCACTTATCTTTGCAGGTGTCCCTCGGGAATCTTATCTG 343 ||||||||| | ||||| || || || || | || ||| |||||||| || || || || Sbjct 55297 TTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCCTACCTC 55356 Query 344 TCGACTCCTGTTGATCGAGGTGGTGAGCAGCTGATTAAGGCTGGGAAATTCTATGGTGAA 403 | ||||||||| ||||| | | || || || | | || | ||||| ||| Sbjct 55357 ACAACTCCTGTTACGAAAGGTGATCAAGTCCTCATCAAAACAGCAAAGCTTTATGGAGAA 55416 Query 404 AGGTTTGTCGATCGCGAATTAACCGAACTTGAGATTTCTTCCATATTCAACCACTGTTGC 463 | || ||||| ||||| | ||||| || | || || || |||||||| || || Sbjct 55417 AAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAACCATTGCTGT 55476 Query 464 TCTTTACTGATTGGGGTGGTGATTGGTTCTTCTGCTAAGATCAAAGCTGGAGCGGAACAA 523 || | ||||| || ||||| |||||||| || ||||| || | ||| || ||||||||| Sbjct 55477 TCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGTGCGGAACAA 55536 Query 524 ATTAAGAAGCGATTTAAAACACTGATGGCCTCCCTCAACAGGCCTTCCCACGGAGAGACA 583 || | |||| ||||||| || || ||||| || | |||||||| | || ||||| || Sbjct 55537 ATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCATGGAGACACT 55596 Query 584 GCTACACTACTTCAGATGTTCAACCCCCACGAAGCAATAGACTGGATCAATGGTCAACCA 643 || || || || |||| |||||||| |||||||| || ||||||||||| |||||| Sbjct 55597 GCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAACTCACAACCA 55656 Query 644 TGGGTTGGTTCCTTGGTTCTATCACTGATAACTACGGATTTTGAGTCTCCTGGTAAGGAG 703 ||||||||||| |||||||||| || ||||||| |||||||| || || || || || Sbjct 55657 TGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCCGGCAAAGAA 55716 Query 704 TTTATGGATCAAATCAAGTTAGTAGCAAGCTATGCACAAATGACTACATACACAACAATC 763 || ||||| || |||| |||| || |||| ||| || ||||| |||||||| |||||| Sbjct 55717 TTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATACACCACAATC 55776 Query 764 AAAGAATACCTTGGTGAGTGTATGGATGCAACACTGGTTATCCCAGCTGTTGCATACGAA 823 ||||||||||| |||||| |||||||| ||| | | || || |||||||| ||| Sbjct 55777 AAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTTGCTGGGGAA 55836 Query 824 ATCAAGGAATTTCTTAAAGTTTCGTCAGAATTAAAATCAGATCATGGAGATTTATTTAAA 883 || ||||| ||||| | | | || || | || | || ||||| || | || ||| Sbjct 55837 ATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAGATTTTCAAA 55896 Query 884 TATCTCGGTGCAATTCGACACCAGGATGCTATTAAATTGGCTCCACGGAATTTCCCTAAT 943 || ||||| || || || || | || |||||||| | || ||||||| || |||||| Sbjct 55897 TACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGCTTTCCTAAT 55956 Query 944 TTAGCTTCTGCGGCTTTTTATTGGAGCAAGAAGGAAAACCCAACAATGTCCGGTTATAGA 1003 | ||||| || || ||||||||||| |||||||| || || || ||||| || |||||| Sbjct 55957 CTTGCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCAGGATATAGA 56016 Query 1004 GCCTCAACAATACAACCGGGCTCTACTGTTAAAGAAGCGCAGTTAGCTCGGTACCGTCGG 1063 ||||| |||||| || || ||| || |||||||| ||| ||||||| ||| | || Sbjct 56017 GCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGCTCGATACAGGAGG 56076 Query 1064 CGTGAAGTCACTCGAGGCGAGGATGGAGCTCATTTGTCAGCGGAAATTGCTGACATTATG 1123 ||||| | | ||||| ||||||||| |||| | ||| |||||||| | || ||| Sbjct 56077 CGTGAGATATCCCGAGGGGAGGATGGAAGTCATATCCCAGATGAAATTGCCCAGATCATG 56136 Query 1124 AGAATGATTGGTGTTACTGG-TCTTCAACCTTAAAGTGAACATACCCATAAAAAA 1177 | || |||||||| || || | | ||| | |||||||| ||| |||||| Sbjct 56137 AAGATAATTGGTGTGACAGGCTATGCAA---AACCATGAACATAACCACAAAAAA 56188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28373614827216