Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_030691.1
Length=8904
Score E
Sequences producing significant alignments: (Bits) Value
seq625 536 7e-149
>seq625
Length=225304
Score = 536 bits (594), Expect = 7e-149
Identities = 729/1015 (72%), Gaps = 4/1015 (0%)
Strand=Plus/Plus
Query 164 GATCCACATCCTGGCATCGGTGATGAGAAGGACATCAAAAAGAATGCTCTAGCTTTTCTT 223
|| || || || ||||| || |||||||| ||| | || |||| | ||||| |
Sbjct 55177 GACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCTTTATTA 55236
Query 224 GACCCAACACGTCGTGAAAAGTTTCATGGTGTGACTCCAAGTTTAATCTTTCTTTGCTTA 283
|| || || || | | || || | ||| || || || || | ||||| || |
Sbjct 55237 GAAGCAGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTGTGTCTT 55296
Query 284 TTAATTCCTGGGCTTCATGCGGCACTTATCTTTGCAGGTGTCCCTCGGGAATCTTATCTG 343
||||||||| | ||||| || || || || | || ||| |||||||| || || || ||
Sbjct 55297 TTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCCTACCTC 55356
Query 344 TCGACTCCTGTTGATCGAGGTGGTGAGCAGCTGATTAAGGCTGGGAAATTCTATGGTGAA 403
| ||||||||| ||||| | | || || || | | || | ||||| |||
Sbjct 55357 ACAACTCCTGTTACGAAAGGTGATCAAGTCCTCATCAAAACAGCAAAGCTTTATGGAGAA 55416
Query 404 AGGTTTGTCGATCGCGAATTAACCGAACTTGAGATTTCTTCCATATTCAACCACTGTTGC 463
| || ||||| ||||| | ||||| || | || || || |||||||| || ||
Sbjct 55417 AAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAACCATTGCTGT 55476
Query 464 TCTTTACTGATTGGGGTGGTGATTGGTTCTTCTGCTAAGATCAAAGCTGGAGCGGAACAA 523
|| | ||||| || ||||| |||||||| || ||||| || | ||| || |||||||||
Sbjct 55477 TCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGTGCGGAACAA 55536
Query 524 ATTAAGAAGCGATTTAAAACACTGATGGCCTCCCTCAACAGGCCTTCCCACGGAGAGACA 583
|| | |||| ||||||| || || ||||| || | |||||||| | || ||||| ||
Sbjct 55537 ATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCATGGAGACACT 55596
Query 584 GCTACACTACTTCAGATGTTCAACCCCCACGAAGCAATAGACTGGATCAATGGTCAACCA 643
|| || || || |||| |||||||| |||||||| || ||||||||||| ||||||
Sbjct 55597 GCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAACTCACAACCA 55656
Query 644 TGGGTTGGTTCCTTGGTTCTATCACTGATAACTACGGATTTTGAGTCTCCTGGTAAGGAG 703
||||||||||| |||||||||| || ||||||| |||||||| || || || || ||
Sbjct 55657 TGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCCGGCAAAGAA 55716
Query 704 TTTATGGATCAAATCAAGTTAGTAGCAAGCTATGCACAAATGACTACATACACAACAATC 763
|| ||||| || |||| |||| || |||| ||| || ||||| |||||||| ||||||
Sbjct 55717 TTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATACACCACAATC 55776
Query 764 AAAGAATACCTTGGTGAGTGTATGGATGCAACACTGGTTATCCCAGCTGTTGCATACGAA 823
||||||||||| |||||| |||||||| ||| | | || || |||||||| |||
Sbjct 55777 AAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTTGCTGGGGAA 55836
Query 824 ATCAAGGAATTTCTTAAAGTTTCGTCAGAATTAAAATCAGATCATGGAGATTTATTTAAA 883
|| ||||| ||||| | | | || || | || | || ||||| || | || |||
Sbjct 55837 ATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAGATTTTCAAA 55896
Query 884 TATCTCGGTGCAATTCGACACCAGGATGCTATTAAATTGGCTCCACGGAATTTCCCTAAT 943
|| ||||| || || || || | || |||||||| | || ||||||| || ||||||
Sbjct 55897 TACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGCTTTCCTAAT 55956
Query 944 TTAGCTTCTGCGGCTTTTTATTGGAGCAAGAAGGAAAACCCAACAATGTCCGGTTATAGA 1003
| ||||| || || ||||||||||| |||||||| || || || ||||| || ||||||
Sbjct 55957 CTTGCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCAGGATATAGA 56016
Query 1004 GCCTCAACAATACAACCGGGCTCTACTGTTAAAGAAGCGCAGTTAGCTCGGTACCGTCGG 1063
||||| |||||| || || ||| || |||||||| ||| ||||||| ||| | ||
Sbjct 56017 GCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGCTCGATACAGGAGG 56076
Query 1064 CGTGAAGTCACTCGAGGCGAGGATGGAGCTCATTTGTCAGCGGAAATTGCTGACATTATG 1123
||||| | | ||||| ||||||||| |||| | ||| |||||||| | || |||
Sbjct 56077 CGTGAGATATCCCGAGGGGAGGATGGAAGTCATATCCCAGATGAAATTGCCCAGATCATG 56136
Query 1124 AGAATGATTGGTGTTACTGG-TCTTCAACCTTAAAGTGAACATACCCATAAAAAA 1177
| || |||||||| || || | | ||| | |||||||| ||| ||||||
Sbjct 56137 AAGATAATTGGTGTGACAGGCTATGCAA---AACCATGAACATAACCACAAAAAA 56188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28373614827216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |