Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_030692.1
Length=8908
Score E
Sequences producing significant alignments: (Bits) Value
seq625 416 2e-112
>seq625
Length=225304
Score = 416 bits (460), Expect = 2e-112
Identities = 712/1021 (70%), Gaps = 14/1021 (1%)
Strand=Plus/Plus
Query 175 GACCCGCACCCGGGTATTGGGCACGAAAAAGAGATTAGGCAGAACGCAGTGGCATTGTTA 234
||||| ||||| || || ||| | || ||||| || || | || | | || || |||
Sbjct 55177 GACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCTTTATTA 55236
Query 235 GAC-CAGTCACGACGTGACATGTTCCACACAGTTACACCTAGCCTTGTATTCCTATGCTT 293
|| ||| || || | ||| |||| | |||||||| ||||| || || || || |
Sbjct 55237 GAAGCAGAT-CGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTGTGTCT 55295
Query 294 ATTAATCCCAGGGCTGCATGCTGCATTCCTCCACgggggggTACCTCGCGAGTCTTACCT 353
||||| || | || || ||||| | | | || || || ||||||||||| |||||
Sbjct 55296 TTTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCCTACCT 55355
Query 354 CTCAACACCCGTTACACGCGGGGAGCAGACTGTTGTTAAGACAGCCAAGTTTTATGGAGA 413
| |||| || ||||| || || || | | || ||||| ||| ||||||||||
Sbjct 55356 CACAACTCCTGTTACGAAAGGTGATCAAGTCCTCATCAAAACAGCAAAGCTTTATGGAGA 55415
Query 414 GAAGACTACACAACGAGAGCTCACCGAGTTAGAGATATCCTCTATCTTCAGCCACTGTTG 473
|| || | || || | | || |||| | || |||||||||| ||| || ||
Sbjct 55416 AAAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAACCATTGCTG 55475
Query 474 CTCCTTACTGATAGGGGTTGTTATAGGTTCATCATCCAAGATTAAGGCTGGAGCTGAACA 533
|| | ||||| || || ||||| |||||||| | || || | || || || |||||
Sbjct 55476 TTCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGTGCGGAACA 55535
Query 534 AATTAAGAAGAGATTCAAGACAATGATGGCAGCCCTCAATCGGCCATCTCATGGTGAGAC 593
||| | ||||||||| ||||| | ||||| | | || |||| | ||||| || ||
Sbjct 55536 AATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCATGGAGACAC 55595
Query 594 TGCTACACTGCTGCAGATGTTTAACCCCCACGAGGCTATAGACTGGATTAACGGCCAACC 653
||| || || || |||| || ||||| ||||| ||||| |||||||| ||| |||||
Sbjct 55596 TGCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAACTCACAACC 55655
Query 654 CTGGGTAGGATCATTTGTTTTATCCCTACTTACCACAGACTTTGAGTCCCCAGGGAAAGA 713
||||| || || | ||| |||| || | || ||||| ||||| || || || |||||
Sbjct 55656 ATGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCCGGCAAAGA 55715
Query 714 GTTCATGGACCAGATTAAGCTCGTCGCAAGCTACGCGCAGATGACCACGTACACCACTAT 773
|||||||| ||||| | || ||||| |||| || |||||||| || |||||||| ||
Sbjct 55716 ATTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATACACCACAAT 55775
Query 774 TAAGGAGTACCTCGCGGAGTGTATGGATGCTACTCTAACAATCCCTGTAGTTGCATATGA 833
|| || |||||| ||||| |||||||| || ||| || |||| ||||| ||
Sbjct 55776 CAAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTTGCTGGGGA 55835
Query 834 GATTCGTGACTTTTTAGAGGTCTCGGCAAAGCTGAAGGAGGAACATGCTGACTTATTTCC 893
||| || ||| | || | | || || |||| || |||| ||| | ||
Sbjct 55836 AATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAGATTTTCAA 55895
Query 894 GTTTTTAGGGGCCATCAGGCACCCAGATGCTATAAAGCTTGCTCCCCGTAGCTTTCCTAA 953
| | ||||||||| | || ||||| ||||| |||||||| || || |||||||||||
Sbjct 55896 ATACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGCTTTCCTAA 55955
Query 954 CTTAGCATCTGCGGCATTTTACTGGAGCAAAAAAGAGAACCCTACAATGGCTGGGTATCG 1013
| || || || || ||||| ||||| || || ||||| || || ||| | || ||| |
Sbjct 55956 TCTTGCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCAGGATATAG 56015
Query 1014 GGCTTCGACCATACAACC--GGGCTCTAGTGTAAAGGAGACCCAGCTTGCCCGATATAGG 1071
|| || || ||| || | ||| ||||| |||| || | ||||| || ||||| |||
Sbjct 56016 AGCCTCCACAATAGTTCCTGGAGCTATAGTG-AAAGAAG-CTCAGCTAGCTCGATACAGG 56073
Query 1072 CGCCGCGAGATATCTCGCGGAGAGGATGG--GGCAGAGCTCTCAGGTGAGATCTCTGCAA 1129
| || |||||||| || || |||||||| | || | || ||| ||| || | |
Sbjct 56074 AGGCGTGAGATATCCCGAGGGGAGGATGGAAGTCATA--TCCCAGATGAAATTGCCCAGA 56131
Query 1130 TAATGAAGATGATAGGTGTGACTGGTCTAAATTGAAAACAATGAACA-AACCAATAAAAA 1188
| |||||||| || |||||||| || || || ||||| ||||||| ||||| |||||
Sbjct 56132 TCATGAAGATAATTGGTGTGACAGG-CT--ATGCAAAACCATGAACATAACCACAAAAAA 56188
Query 1189 A 1189
|
Sbjct 56189 A 56189
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28386413029664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |