Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_030692.1 Length=8908 Score E Sequences producing significant alignments: (Bits) Value seq625 416 2e-112 >seq625 Length=225304 Score = 416 bits (460), Expect = 2e-112 Identities = 712/1021 (70%), Gaps = 14/1021 (1%) Strand=Plus/Plus Query 175 GACCCGCACCCGGGTATTGGGCACGAAAAAGAGATTAGGCAGAACGCAGTGGCATTGTTA 234 ||||| ||||| || || ||| | || ||||| || || | || | | || || ||| Sbjct 55177 GACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCTTTATTA 55236 Query 235 GAC-CAGTCACGACGTGACATGTTCCACACAGTTACACCTAGCCTTGTATTCCTATGCTT 293 || ||| || || | ||| |||| | |||||||| ||||| || || || || | Sbjct 55237 GAAGCAGAT-CGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTCTGTGTCT 55295 Query 294 ATTAATCCCAGGGCTGCATGCTGCATTCCTCCACgggggggTACCTCGCGAGTCTTACCT 353 ||||| || | || || ||||| | | | || || || ||||||||||| ||||| Sbjct 55296 TTTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGTCCTACCT 55355 Query 354 CTCAACACCCGTTACACGCGGGGAGCAGACTGTTGTTAAGACAGCCAAGTTTTATGGAGA 413 | |||| || ||||| || || || | | || ||||| ||| |||||||||| Sbjct 55356 CACAACTCCTGTTACGAAAGGTGATCAAGTCCTCATCAAAACAGCAAAGCTTTATGGAGA 55415 Query 414 GAAGACTACACAACGAGAGCTCACCGAGTTAGAGATATCCTCTATCTTCAGCCACTGTTG 473 || || | || || | | || |||| | || |||||||||| ||| || || Sbjct 55416 AAAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAACCATTGCTG 55475 Query 474 CTCCTTACTGATAGGGGTTGTTATAGGTTCATCATCCAAGATTAAGGCTGGAGCTGAACA 533 || | ||||| || || ||||| |||||||| | || || | || || || ||||| Sbjct 55476 TTCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGTGCGGAACA 55535 Query 534 AATTAAGAAGAGATTCAAGACAATGATGGCAGCCCTCAATCGGCCATCTCATGGTGAGAC 593 ||| | ||||||||| ||||| | ||||| | | || |||| | ||||| || || Sbjct 55536 AATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCATGGAGACAC 55595 Query 594 TGCTACACTGCTGCAGATGTTTAACCCCCACGAGGCTATAGACTGGATTAACGGCCAACC 653 ||| || || || |||| || ||||| ||||| ||||| |||||||| ||| ||||| Sbjct 55596 TGCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAACTCACAACC 55655 Query 654 CTGGGTAGGATCATTTGTTTTATCCCTACTTACCACAGACTTTGAGTCCCCAGGGAAAGA 713 ||||| || || | ||| |||| || | || ||||| ||||| || || || ||||| Sbjct 55656 ATGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCCGGCAAAGA 55715 Query 714 GTTCATGGACCAGATTAAGCTCGTCGCAAGCTACGCGCAGATGACCACGTACACCACTAT 773 |||||||| ||||| | || ||||| |||| || |||||||| || |||||||| || Sbjct 55716 ATTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATACACCACAAT 55775 Query 774 TAAGGAGTACCTCGCGGAGTGTATGGATGCTACTCTAACAATCCCTGTAGTTGCATATGA 833 || || |||||| ||||| |||||||| || ||| || |||| ||||| || Sbjct 55776 CAAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTTGCTGGGGA 55835 Query 834 GATTCGTGACTTTTTAGAGGTCTCGGCAAAGCTGAAGGAGGAACATGCTGACTTATTTCC 893 ||| || ||| | || | | || || |||| || |||| ||| | || Sbjct 55836 AATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAGATTTTCAA 55895 Query 894 GTTTTTAGGGGCCATCAGGCACCCAGATGCTATAAAGCTTGCTCCCCGTAGCTTTCCTAA 953 | | ||||||||| | || ||||| ||||| |||||||| || || ||||||||||| Sbjct 55896 ATACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGCTTTCCTAA 55955 Query 954 CTTAGCATCTGCGGCATTTTACTGGAGCAAAAAAGAGAACCCTACAATGGCTGGGTATCG 1013 | || || || || ||||| ||||| || || ||||| || || ||| | || ||| | Sbjct 55956 TCTTGCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCAGGATATAG 56015 Query 1014 GGCTTCGACCATACAACC--GGGCTCTAGTGTAAAGGAGACCCAGCTTGCCCGATATAGG 1071 || || || ||| || | ||| ||||| |||| || | ||||| || ||||| ||| Sbjct 56016 AGCCTCCACAATAGTTCCTGGAGCTATAGTG-AAAGAAG-CTCAGCTAGCTCGATACAGG 56073 Query 1072 CGCCGCGAGATATCTCGCGGAGAGGATGG--GGCAGAGCTCTCAGGTGAGATCTCTGCAA 1129 | || |||||||| || || |||||||| | || | || ||| ||| || | | Sbjct 56074 AGGCGTGAGATATCCCGAGGGGAGGATGGAAGTCATA--TCCCAGATGAAATTGCCCAGA 56131 Query 1130 TAATGAAGATGATAGGTGTGACTGGTCTAAATTGAAAACAATGAACA-AACCAATAAAAA 1188 | |||||||| || |||||||| || || || ||||| ||||||| ||||| ||||| Sbjct 56132 TCATGAAGATAATTGGTGTGACAGG-CT--ATGCAAAACCATGAACATAACCACAAAAAA 56188 Query 1189 A 1189 | Sbjct 56189 A 56189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28386413029664