Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_030701.1 Length=8798 Score E Sequences producing significant alignments: (Bits) Value seq625 405 3e-109 >seq625 Length=225304 Score = 405 bits (448), Expect = 3e-109 Identities = 561/785 (71%), Gaps = 4/785 (1%) Strand=Plus/Plus Query 367 TATGGTGAACGAACAGCTTCACGGGAGCTAACTGAGCTGGAAATATCATCCATCTTTAAC 426 ||||| ||| ||||| | || || | | || || ||| | ||||| ||||| ||| Sbjct 55408 TATGGAGAAAAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCAAC 55467 Query 427 CATTGCTGCTCCTTGCTCATAGGAGTTGTTATTGGGTCGTCGGCTAAAATCAGGGCCGGC 486 |||||||| || |||| || ||||| |||||||| || ||||||||||| || || || Sbjct 55468 CATTGCTGTTCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAGGT 55527 Query 487 GCAGAACAAATAAAGAAGCGCTTCAAAACCTTGATGGCCTCTCTCAACAGGCCATCACAC 546 || |||||||||| |||| | || || || | ||||| || | |||||||| | || Sbjct 55528 GCGGAACAAATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGCAT 55587 Query 547 GGGGAAACTGCAACTCTGCTGCAGATGTTCAACCCACATGAGGCAATCGATTGGATTAAT 606 || || ||||| ||||| || |||| |||||||| || || || || || ||||| || Sbjct 55588 GGAGACACTGCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCAAC 55647 Query 607 GGACAGCCCTGGGTTGGATCATTAGTTCTGTCACTCCTAACAACTGATTTTGAATCTCCA 666 ||| || |||||||| || | ||||| || || |||| || ||||||||||| || Sbjct 55648 TCACAACCATGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCACCC 55707 Query 667 GGGAAAGAGTTTATGGATCAAATTAAGCTTGTTGCCAGTTATGCCCAGATGACAACATAT 726 || ||||| || ||||| || || | || || || || | |||||||||||| ||||| Sbjct 55708 GGCAAAGAATTCATGGAGCAGATCAGACTAGTCGCTAGCTTTGCCCAGATGACGACATAC 55767 Query 727 ACCACTATAAAAGAATACCTGGCTGAATGTATGGATGCAACATTAACTATCCCTGCCGTG 786 ||||| || ||||||||||| ||| || |||||||| ||||||| || ||||| || Sbjct 55768 ACCACAATCAAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCTGTT 55827 Query 787 GCTCACGAGATACGTGAGTTTCTTGAGATCTCAGCGAAACTTAAGAATGAGCATGCTGAA 846 ||| || || |||||||| || | | | ||||| ||| || |||| ||| Sbjct 55828 GCTGGGGAAATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGTGAG 55887 Query 847 CTATTCCCATTTCTCGGAGCAATAAGGCACCCTGATGCCATCAAGCTAGCCCCACGTAGT 906 | ||| || ||||| || || | || || || || || ||||| || ||||| || Sbjct 55888 ATTTTCAAATACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGGAGC 55947 Query 907 TTTCCAAACCTAGCATCGGCTGCATTTTATTGGAGTAAGAAGGAAAATCCCACGATGGCT 966 ||||| || || || || || || |||||||||||||||||||| ||||| || ||| | Sbjct 55948 TTTCCTAATCTTGCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTATGTCA 56007 Query 967 GGCTACCGGGCATCCACGATCCAGCCAGGGGCAACAGTTAAAGAGACTCAACTGGCGCGC 1026 || || | || ||||| || || || || | ||| ||||| |||| || || || Sbjct 56008 GGATATAGAGCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGCTCGA 56067 Query 1027 TATCGCCGACGTGAGGTATCTAGAGGGGAAGACGGAGCGGAGCTTTCAGGTGAGATCTCT 1086 || | | |||||| |||| ||||||| || ||| | | ||| ||| || | Sbjct 56068 TACAGGAGGCGTGAGATATCCCGAGGGGAGGATGGAAGTCATATCCCAGATGAAATTGCC 56127 Query 1087 GATATTATGAAGATGATTGGAGTGACAGGGCTTGTTTAACAATAATCGAACATAACAATA 1146 | || |||||||| ||||| |||||||| || ||| || ||||||||| | | Sbjct 56128 CAGATCATGAAGATAATTGGTGTGACAGGCTATGCAAAACCAT----GAACATAACCACA 56183 Query 1147 AAAAA 1151 ||||| Sbjct 56184 AAAAA 56188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28034462462344