Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_030885.1
Length=8970
Score E
Sequences producing significant alignments: (Bits) Value
seq625 342 3e-90
>seq625
Length=225304
Score = 342 bits (378), Expect = 3e-90
Identities = 645/939 (69%), Gaps = 11/939 (1%)
Strand=Plus/Plus
Query 172 GGCACCGACCCTCATCCCGGGATCGGCGAAGAAATGGATATTCGCAAGAATGCTCTAGCA 231
|| || ||||| || ||||| || || || || | || |||| || |||| | ||
Sbjct 55171 GGAACTGACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCT 55230
Query 232 TTCCTTGATGCCCAGAGGCGCGAGTCTTTT--CATACTGTTACACCAAGTTTAGTGTTCT 289
|| | || || ||| ||||| | | || |||||||||| || |||| ||
Sbjct 55231 TTATTAGAAGC--AGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTC 55288
Query 290 TGTGTTTATTGATTCCTGGCTTGCATGCGGCTCTGCTTTTTGGAGGTGTACCAAGGGAGT 349
||||| | || |||||| || | || || || ||| | | |||||| || || | ||||
Sbjct 55289 TGTGTCTTTTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGT 55348
Query 350 CATATTTGTCTGTACCAGTTACGAGTGCGGATGGTCGTACCATTATAAAGACAGCAAGGT 409
| || | | || ||||||| | ||| || | | || || ||||||| |
Sbjct 55349 CCTACCTCACAACTCCTGTTACGAAAGGTGATCAA-GTCC--TCATCAAAACAGCAAAGC 55405
Query 410 TTTATGGGAAAGACGCGCAAGAAAGAGAATTAACAGAACTTGAAGTGTCCTCCATATTCA 469
||||||| || | | || | ||||| | ||||| ||||| || || || ||||
Sbjct 55406 TTTATGGAGAAAAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCA 55465
Query 470 ACCATTGTTGTTCGCTCCTCATCGGTGTTGTTATTGGGTCGTCATCCAAGATTAAGGCGG 529
||||||| ||||| || || ||||| || |||||||| || || | || || | || |
Sbjct 55466 ACCATTGCTGTTCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAG 55525
Query 530 GGGCTGACCAGATTAAGAAAAGGTTTAGAACATTAATGGCATCACTCAACCGACCCACTC 589
| || || || || | ||| || |||| || ||||||| ||| | ||| | || | |
Sbjct 55526 GTGCGGAACAAATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGC 55585
Query 590 ATGGAGAGACAGCTACTCTGCTTCAAATGTTTAACCCGCATGAGGCAATAGACTGGATCA 649
||||||| || || ||||| || || | || ||||| || || || || ||||||||||
Sbjct 55586 ATGGAGACACTGCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCA 55645
Query 650 ATGCTCAGCCCTGGGTCGGCTCATTTGTTTTAGCACTATTGACCACTGATTTTGAGCCGC 709
| | || || ||||| || || | ||| || | || || || || |||||||| | |
Sbjct 55646 ACTCACAACCATGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCAC 55705
Query 710 CTGGAAAGGAGTTTATGGACCAAATTAAACTTGTTGC-CGCTTACGCTCAAATGACACCA 768
| || || || || ||||| || || | ||| || || |||| || || ||||| ||
Sbjct 55706 CCGGCAAAGAATTCATGGAGCAGATCAGACTAGTCGCTAGCTT-TGCCCAGATGACGACA 55764
Query 769 TACACAACAATTAAGGAATACCTAAATGAGTGCATGGATGCCACCATAACCATCCCTGCA 828
||||| ||||| || |||||||| ||||||||||||||||| || ||| || |||||
Sbjct 55765 TACACCACAATCAAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCT 55824
Query 829 GTTGTATATGAGATACGAGATTTTCTTAAGGTCACTTCTGAGCTTAAAGCTGATCATGGA 888
|||| || || || ||||| | | ||| | || || || || |||||
Sbjct 55825 GTTGCTGGGGAAATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGT 55884
Query 889 GATTTGTTTAAGTACTTGGGAGCTATTCGCCATGCAGATGCAATCAAGTTAGCTCCA-AG 947
|| | || || ||| | || || || || ||| |||| || || ||| | || ||| |
Sbjct 55885 GAGATTTTCAAATACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGG 55944
Query 948 AAATTTCCCAAACTTGGCATCGGCAGCTTTTTATTGGAGCAAGAAAGAGAATCCCACAAT 1007
| ||||| || ||| || || ||||| ||||||||||| ||||| |||||||| || ||
Sbjct 55945 AGCTTTCCTAATCTT-GCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTAT 56003
Query 1008 GACTGGATATCGAGCTTCGACTATCCAACCTGGATCAATTGTTAAGGAAGCACAACTTGC 1067
| | |||||| |||| || || || |||||| | || || || ||||| || || ||
Sbjct 56004 GTCAGGATATAGAGCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGC 56063
Query 1068 CAGATATCGAAGGCGTGAGATCCTGAGAGGTGATGATGG 1106
|||| | ||||||||||| |||| || |||||
Sbjct 56064 TCGATACAGGAGGCGTGAGATATCCCGAGGGGAGGATGG 56102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 28584785167608
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |