Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_030885.1 Length=8970 Score E Sequences producing significant alignments: (Bits) Value seq625 342 3e-90 >seq625 Length=225304 Score = 342 bits (378), Expect = 3e-90 Identities = 645/939 (69%), Gaps = 11/939 (1%) Strand=Plus/Plus Query 172 GGCACCGACCCTCATCCCGGGATCGGCGAAGAAATGGATATTCGCAAGAATGCTCTAGCA 231 || || ||||| || ||||| || || || || | || |||| || |||| | || Sbjct 55171 GGAACTGACCCCCACCCCGGCATAGGGGATGAGAAAGACCTTCGGAAAAATGTGATTGCT 55230 Query 232 TTCCTTGATGCCCAGAGGCGCGAGTCTTTT--CATACTGTTACACCAAGTTTAGTGTTCT 289 || | || || ||| ||||| | | || |||||||||| || |||| || Sbjct 55231 TTATTAGAAGC--AGATCGGCGAGCACTGTACCACGCTGTTACACCGAGCCTAGTTTTTC 55288 Query 290 TGTGTTTATTGATTCCTGGCTTGCATGCGGCTCTGCTTTTTGGAGGTGTACCAAGGGAGT 349 ||||| | || |||||| || | || || || ||| | | |||||| || || | |||| Sbjct 55289 TGTGTCTTTTAATTCCTAGCCTTCACGCTGCCCTGATATATGGAGGAGTCCCTCGCGAGT 55348 Query 350 CATATTTGTCTGTACCAGTTACGAGTGCGGATGGTCGTACCATTATAAAGACAGCAAGGT 409 | || | | || ||||||| | ||| || | | || || ||||||| | Sbjct 55349 CCTACCTCACAACTCCTGTTACGAAAGGTGATCAA-GTCC--TCATCAAAACAGCAAAGC 55405 Query 410 TTTATGGGAAAGACGCGCAAGAAAGAGAATTAACAGAACTTGAAGTGTCCTCCATATTCA 469 ||||||| || | | || | ||||| | ||||| ||||| || || || |||| Sbjct 55406 TTTATGGAGAAAAAACAGTTGATCGTGAATTGTCGGAACTAGAAGTCTCATCTATCTTCA 55465 Query 470 ACCATTGTTGTTCGCTCCTCATCGGTGTTGTTATTGGGTCGTCATCCAAGATTAAGGCGG 529 ||||||| ||||| || || ||||| || |||||||| || || | || || | || | Sbjct 55466 ACCATTGCTGTTCACTGCTGATCGGAGTGGTTATTGGTTCATCGGCTAAAATAAGAGCAG 55525 Query 530 GGGCTGACCAGATTAAGAAAAGGTTTAGAACATTAATGGCATCACTCAACCGACCCACTC 589 | || || || || | ||| || |||| || ||||||| ||| | ||| | || | | Sbjct 55526 GTGCGGAACAAATAAGGAAGAGATTTAAGACGCTAATGGCTTCAATAAACAGGCCGGCGC 55585 Query 590 ATGGAGAGACAGCTACTCTGCTTCAAATGTTTAACCCGCATGAGGCAATAGACTGGATCA 649 ||||||| || || ||||| || || | || ||||| || || || || |||||||||| Sbjct 55586 ATGGAGACACTGCCACTCTCCTCCAGACCTTCAACCCTCACGAAGCTATTGACTGGATCA 55645 Query 650 ATGCTCAGCCCTGGGTCGGCTCATTTGTTTTAGCACTATTGACCACTGATTTTGAGCCGC 709 | | || || ||||| || || | ||| || | || || || || |||||||| | | Sbjct 55646 ACTCACAACCATGGGTTGGTTCTCTGGTTCTATCTCTTTTAACTACAGATTTTGAATCAC 55705 Query 710 CTGGAAAGGAGTTTATGGACCAAATTAAACTTGTTGC-CGCTTACGCTCAAATGACACCA 768 | || || || || ||||| || || | ||| || || |||| || || ||||| || Sbjct 55706 CCGGCAAAGAATTCATGGAGCAGATCAGACTAGTCGCTAGCTT-TGCCCAGATGACGACA 55764 Query 769 TACACAACAATTAAGGAATACCTAAATGAGTGCATGGATGCCACCATAACCATCCCTGCA 828 ||||| ||||| || |||||||| ||||||||||||||||| || ||| || ||||| Sbjct 55765 TACACCACAATCAAAGAATACCTCAATGAGTGCATGGATGCGACATTAATGATTCCTGCT 55824 Query 829 GTTGTATATGAGATACGAGATTTTCTTAAGGTCACTTCTGAGCTTAAAGCTGATCATGGA 888 |||| || || || ||||| | | ||| | || || || || ||||| Sbjct 55825 GTTGCTGGGGAAATTAAGGAGTTTCTCGATACTGCCTCTAAACTCAAGGCCGACCATGGT 55884 Query 889 GATTTGTTTAAGTACTTGGGAGCTATTCGCCATGCAGATGCAATCAAGTTAGCTCCA-AG 947 || | || || ||| | || || || || ||| |||| || || ||| | || ||| | Sbjct 55885 GAGATTTTCAAATACCTCGGGGCCATCCGTCATCCAGACGCTATTAAGCTTGCGCCACGG 55944 Query 948 AAATTTCCCAAACTTGGCATCGGCAGCTTTTTATTGGAGCAAGAAAGAGAATCCCACAAT 1007 | ||||| || ||| || || ||||| ||||||||||| ||||| |||||||| || || Sbjct 55945 AGCTTTCCTAATCTT-GCTTCAGCAGCCTTTTATTGGAGTAAGAAGGAGAATCCGACTAT 56003 Query 1008 GACTGGATATCGAGCTTCGACTATCCAACCTGGATCAATTGTTAAGGAAGCACAACTTGC 1067 | | |||||| |||| || || || |||||| | || || || ||||| || || || Sbjct 56004 GTCAGGATATAGAGCCTCCACAATAGTTCCTGGAGCTATAGTGAAAGAAGCTCAGCTAGC 56063 Query 1068 CAGATATCGAAGGCGTGAGATCCTGAGAGGTGATGATGG 1106 |||| | ||||||||||| |||| || ||||| Sbjct 56064 TCGATACAGGAGGCGTGAGATATCCCGAGGGGAGGATGG 56102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 28584785167608