Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq201 351 8e-93 seq9 347 1e-91 seq69 343 1e-90 seq2 235 4e-58 seq64 199 3e-47 >seq201 Length=1188649 Score = 351 bits (388), Expect = 8e-93 Identities = 241/272 (89%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 601520 ATGTGCAGCTGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACAGGGAACCTAAGAGT 601461 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 || |||||| |||||||||||| |||||||||||||||||||||| ||| |||| |||| Sbjct 601460 GCTGGATACTTTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGTTGATTTTTAGGCA 601401 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 || || || ||||||||||||| || |||||| |||| || ||||||||||| || || Sbjct 601400 GAATCAAGTGTGTTGGGCCTCAAGATTACCTACCTTGCACTAATGGATGGAAAAGTTTAC 601341 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 ||||||||||| ||||||||||| ||| ||||||||||||| ||| ||||||||||||| Sbjct 601340 GATATCACAGAATGGGCTGGATGTCAGTGTGTGGGAATCTCACCAAATACCCACAGAGTT 601281 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 |||| |||||||||||||||||| ||| |||| Sbjct 601280 CCTTATCACATCTCATTTGGTTCTCGGGTGCC 601249 >seq9 Length=48697558 Score = 347 bits (384), Expect = 1e-91 Identities = 239/270 (89%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||| |||||| ||||||||||||||||||||||||||| ||| |||| ||||| Sbjct 35824396 ATGTGTAGCCAATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACAGGGGACCTCAGAGT 35824455 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 || ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 35824456 GCTTGATACTGTGCTGAGTGTAACAGGCTGCATCATGCTGAGGAAGGTGACTTTTGGGCA 35824515 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 || || || ||||||| |||||| || ||||||||||| || ||||||||||| || ||| Sbjct 35824516 GAATCAAGTATGTTGGACCTCAAGATTACCTACTTTGCACTAATGGATGGAAAAGTTTAT 35824575 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 ||||||||||| ||||||| ||| |||| |||||||||||| || |||||||||||||| Sbjct 35824576 GATATCACAGAATGGGCTGCATGTCAGCATGTGGGAATCTCACCGGATACCCACAGAGTT 35824635 Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATG 5263 |||| ||||||||||||||||| ||| || Sbjct 35824636 CCTTATCACATCTCATTTGGTTATCGGGTG 35824665 >seq69 Length=13140679 Score = 343 bits (380), Expect = 1e-90 Identities = 241/273 (88%), Gaps = 4/273 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||||||||||| |||||||||||| |||||||||||| ||||||||||||| Sbjct 7151314 ATGTGTAGCCGATGCCAAGGAAAGCATAGG---TTTGAAATGGACAGGGAACCTAAGAGC 7151258 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 7151257 ACCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGTGACTTTGGGGCA 7151198 Query 5114 GAGTCGAGC-ATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172 || || || |||||||||||||| || |||||| |||| || ||||||| ||| || || Sbjct 7151197 GAATCAAGTTATGTTGGGCCTCAAGATTACCTACGTTGCACTAATGGATGCAAAAGTTTA 7151138 Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232 |||||||||||| ||||||||||| ||||| ||||||||||| |||| |||||||||||| Sbjct 7151137 TGATATCACAGAATGGGCTGGATGTCAGCGCGTGGGAATCTCACCAGTTACCCACAGAGT 7151078 Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265 |||| |||||| ||||||||||| ||| |||| Sbjct 7151077 TCCTTATCACATGTCATTTGGTTCTCGGGTGCC 7151045 >seq2 Length=75421681 Score = 235 bits (260), Expect = 4e-58 Identities = 150/163 (92%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| Sbjct 7369247 AGGAGGTTTGAAATGGACAGGGAACCTAAGAGTGCTAGATACTGTGCTGAGTGTAACAGG 7369188 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||||||||||||||||||||| || || |||||||||||||| || Sbjct 7369187 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAATCAAGTATGTTGGGCCTCAAGATT 7369128 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| || |||| |||||| || ||||||||||||| Sbjct 7369127 ACCTACTTTGCACTAATGGGTGGAAAAGTTTATGATATCACAG 7369085 Score = 118 bits (130), Expect = 9e-23 Identities = 77/85 (91%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| |||| || Sbjct 7368994 CAGAATGGGCTGGATGTCAGCGTGTGGGAATCTCACCAGATACCCATAGAGTTCCTTATC 7368935 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||| |||| Sbjct 7368934 ACATCTCATTTGGTTCTCGGGTGCC 7368910 >seq64 Length=13628464 Score = 199 bits (220), Expect = 3e-47 Identities = 119/125 (95%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||| Sbjct 7157249 ATGTGTAGCCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACAGGGAACCTAAGAGT 7157308 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 7157309 GCTAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 7157368 Query 5114 GAGTC 5118 || || Sbjct 7157369 GAATC 7157373 Score = 109 bits (120), Expect = 4e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5186 TGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATC 5245 ||||||||||| ||||||||||||||||| ||||||||| | ||||| |||| ||||||| Sbjct 7157378 TGGGCTGGATGTCAGCGTGTGGGAATCTCACCAGATACCAATAGAGTTCCTTATCACATC 7157437 Query 5246 TCATTTGGTTCACGGATGCC 5265 ||||||||||| ||| |||| Sbjct 7157438 TCATTTGGTTCTCGGGTGCC 7157457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40113481383864