Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_001461.1
Length=12573
Score E
Sequences producing significant alignments: (Bits) Value
seq201 351 8e-93
seq9 347 1e-91
seq69 343 1e-90
seq2 235 4e-58
seq64 199 3e-47
>seq201
Length=1188649
Score = 351 bits (388), Expect = 8e-93
Identities = 241/272 (89%), Gaps = 0/272 (0%)
Strand=Plus/Minus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 601520 ATGTGCAGCTGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACAGGGAACCTAAGAGT 601461
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
|| |||||| |||||||||||| |||||||||||||||||||||| ||| |||| ||||
Sbjct 601460 GCTGGATACTTTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGTTGATTTTTAGGCA 601401
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
|| || || ||||||||||||| || |||||| |||| || ||||||||||| || ||
Sbjct 601400 GAATCAAGTGTGTTGGGCCTCAAGATTACCTACCTTGCACTAATGGATGGAAAAGTTTAC 601341
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
||||||||||| ||||||||||| ||| ||||||||||||| ||| |||||||||||||
Sbjct 601340 GATATCACAGAATGGGCTGGATGTCAGTGTGTGGGAATCTCACCAAATACCCACAGAGTT 601281
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|||| |||||||||||||||||| ||| ||||
Sbjct 601280 CCTTATCACATCTCATTTGGTTCTCGGGTGCC 601249
>seq9
Length=48697558
Score = 347 bits (384), Expect = 1e-91
Identities = 239/270 (89%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||| |||| |||||| ||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 35824396 ATGTGTAGCCAATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACAGGGGACCTCAGAGT 35824455
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
|| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 35824456 GCTTGATACTGTGCTGAGTGTAACAGGCTGCATCATGCTGAGGAAGGTGACTTTTGGGCA 35824515
Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173
|| || || ||||||| |||||| || ||||||||||| || ||||||||||| || |||
Sbjct 35824516 GAATCAAGTATGTTGGACCTCAAGATTACCTACTTTGCACTAATGGATGGAAAAGTTTAT 35824575
Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233
||||||||||| ||||||| ||| |||| |||||||||||| || ||||||||||||||
Sbjct 35824576 GATATCACAGAATGGGCTGCATGTCAGCATGTGGGAATCTCACCGGATACCCACAGAGTT 35824635
Query 5234 CCTTGTCACATCTCATTTGGTTCACGGATG 5263
|||| ||||||||||||||||| ||| ||
Sbjct 35824636 CCTTATCACATCTCATTTGGTTATCGGGTG 35824665
>seq69
Length=13140679
Score = 343 bits (380), Expect = 1e-90
Identities = 241/273 (88%), Gaps = 4/273 (1%)
Strand=Plus/Minus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||| ||||||||||| |||||||||||| |||||||||||| |||||||||||||
Sbjct 7151314 ATGTGTAGCCGATGCCAAGGAAAGCATAGG---TTTGAAATGGACAGGGAACCTAAGAGC 7151258
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 7151257 ACCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGTGACTTTGGGGCA 7151198
Query 5114 GAGTCGAGC-ATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTA 5172
|| || || |||||||||||||| || |||||| |||| || ||||||| ||| || ||
Sbjct 7151197 GAATCAAGTTATGTTGGGCCTCAAGATTACCTACGTTGCACTAATGGATGCAAAAGTTTA 7151138
Query 5173 TGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGT 5232
|||||||||||| ||||||||||| ||||| ||||||||||| |||| ||||||||||||
Sbjct 7151137 TGATATCACAGAATGGGCTGGATGTCAGCGCGTGGGAATCTCACCAGTTACCCACAGAGT 7151078
Query 5233 CCCTTGTCACATCTCATTTGGTTCACGGATGCC 5265
|||| |||||| ||||||||||| ||| ||||
Sbjct 7151077 TCCTTATCACATGTCATTTGGTTCTCGGGTGCC 7151045
>seq2
Length=75421681
Score = 235 bits (260), Expect = 4e-58
Identities = 150/163 (92%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080
|||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 7369247 AGGAGGTTTGAAATGGACAGGGAACCTAAGAGTGCTAGATACTGTGCTGAGTGTAACAGG 7369188
Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140
||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct 7369187 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAATCAAGTATGTTGGGCCTCAAGATT 7369128
Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183
||||||||||| || |||| |||||| || |||||||||||||
Sbjct 7369127 ACCTACTTTGCACTAATGGGTGGAAAAGTTTATGATATCACAG 7369085
Score = 118 bits (130), Expect = 9e-23
Identities = 77/85 (91%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240
|||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| |||| ||
Sbjct 7368994 CAGAATGGGCTGGATGTCAGCGTGTGGGAATCTCACCAGATACCCATAGAGTTCCTTATC 7368935
Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265
|||||||||||||||| ||| ||||
Sbjct 7368934 ACATCTCATTTGGTTCTCGGGTGCC 7368910
>seq64
Length=13628464
Score = 199 bits (220), Expect = 3e-47
Identities = 119/125 (95%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053
||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 7157249 ATGTGTAGCCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACAGGGAACCTAAGAGT 7157308
Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 7157309 GCTAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 7157368
Query 5114 GAGTC 5118
|| ||
Sbjct 7157369 GAATC 7157373
Score = 109 bits (120), Expect = 4e-20
Identities = 72/80 (90%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 5186 TGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATC 5245
||||||||||| ||||||||||||||||| ||||||||| | ||||| |||| |||||||
Sbjct 7157378 TGGGCTGGATGTCAGCGTGTGGGAATCTCACCAGATACCAATAGAGTTCCTTATCACATC 7157437
Query 5246 TCATTTGGTTCACGGATGCC 5265
||||||||||| ||| ||||
Sbjct 7157438 TCATTTGGTTCTCGGGTGCC 7157457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 40113481383864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |