Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq201 379 2e-101 seq69 369 3e-98 seq9 360 2e-95 seq2 241 1e-59 seq64 219 3e-53 >seq201 Length=1188649 Score = 379 bits (420), Expect = 2e-101 Identities = 271/309 (88%), Gaps = 3/309 (1%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 || ||||||| |||||||||| | ||||||| ||||||||||||||||||||||||||| Sbjct 601534 CACTGAATACTATGATGTGCAGCTGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACA 601475 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||| Sbjct 601474 GGGAACCTAAGAGTGCTGGATACTTTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAG 601415 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 ||| |||| |||||| ||||| ||||||||||||| || |||||| |||| || |||| Sbjct 601414 TTGATTTTTAGGCAGAATCAAGTGTGTTGGGCCTCAAGATTACCTACCTTGCACTAATGG 601355 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||||||| || || ||||||||||| ||||||||||| ||| ||||||||||||| ||| Sbjct 601354 ATGGAAAAGTTTACGATATCACAGAATGGGCTGGATGTCAGTGTGTGGGAATCTCACCAA 601295 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG-CGAC 5263 ||||||||||||| |||||||||||| |||||||||| ||| ||||||| ||||| || | Sbjct 601294 ATACCCACAGAGTTCCTTATCACATCTCATTTGGTTCTCGGGTGCCAGGCACCAGTCGTC 601235 Query 5264 --CAGAGAG 5270 ||||||| Sbjct 601234 GGCAGAGAG 601226 >seq69 Length=13140679 Score = 369 bits (408), Expect = 3e-98 Identities = 260/295 (88%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||| |||| |||||||| | ||||||||| |||||||||||| |||||||||||| Sbjct 7151328 CAATGGATACTATGATGTGTAGCCGATGCCAAGGAAAGCATAGG---TTTGAAATGGACA 7151272 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct 7151271 GGGAACCTAAGAGCACCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAG 7151212 Query 5085 GTGACTTTTGGGCAGAGTCAAGC-ATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATG 5143 |||||||| ||||||| ||||| |||||||||||||| || |||||| |||| || ||| Sbjct 7151211 GTGACTTTGGGGCAGAATCAAGTTATGTTGGGCCTCAAGATTACCTACGTTGCACTAATG 7151152 Query 5144 GATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCA 5203 |||| ||| || |||||||||||||| ||||||||||| ||||| ||||||||||| ||| Sbjct 7151151 GATGCAAAAGTTTATGATATCACAGAATGGGCTGGATGTCAGCGCGTGGGAATCTCACCA 7151092 Query 5204 GATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 | |||||||||||| ||||||||||| |||||||||| ||| ||||||| |||| Sbjct 7151091 GTTACCCACAGAGTTCCTTATCACATGTCATTTGGTTCTCGGGTGCCAGGCACCA 7151037 >seq9 Length=48697558 Score = 360 bits (398), Expect = 2e-95 Identities = 250/284 (88%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||| ||| |||||||| | || |||||| ||||||||||||||||||||||||||| Sbjct 35824382 CAATGGATATTATGATGTGTAGCCAATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACA 35824441 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||| |||| ||||||| ||||||||||||||||||| |||||||||| ||||||||||| Sbjct 35824442 GGGGACCTCAGAGTGCTTGATACTGTGCTGAGTGTAACAGGCTGCATCATGCTGAGGAAG 35824501 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 |||||||||||||||| ||||| ||||||| |||||| || ||||||||||| || |||| Sbjct 35824502 GTGACTTTTGGGCAGAATCAAGTATGTTGGACCTCAAGATTACCTACTTTGCACTAATGG 35824561 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||||||| || |||||||||||||| ||||||| ||| |||| |||||||||||| || | Sbjct 35824562 ATGGAAAAGTTTATGATATCACAGAATGGGCTGCATGTCAGCATGTGGGAATCTCACCGG 35824621 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATG 5248 ||||||||||||| |||||||||||| ||||||||| ||| || Sbjct 35824622 ATACCCACAGAGTTCCTTATCACATCTCATTTGGTTATCGGGTG 35824665 >seq2 Length=75421681 Score = 241 bits (266), Expect = 1e-59 Identities = 151/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| Sbjct 7369247 AGGAGGTTTGAAATGGACAGGGAACCTAAGAGTGCTAGATACTGTGCTGAGTGTAACAGG 7369188 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || Sbjct 7369187 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAATCAAGTATGTTGGGCCTCAAGATT 7369128 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| || |||| |||||| || ||||||||||||| Sbjct 7369127 ACCTACTTTGCACTAATGGGTGGAAAAGTTTATGATATCACAG 7369085 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||| ||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||| Sbjct 7368994 CAGAATGGGCTGGATGTCAGCGTGTGGGAATCTCACCAGATACCCATAGAGTTCCTTATC 7368935 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| ||||||| ||||| Sbjct 7368934 ACATCTCATTTGGTTCTCGGGTGCCAGGCACCAG 7368901 >seq64 Length=13628464 Score = 219 bits (242), Expect = 3e-53 Identities = 133/141 (94%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||| Sbjct 7157235 CAATGAATACTATGATGTGTAGCCGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACA 7157294 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 7157295 GGGAACCTAAGAGTGCTAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAG 7157354 Query 5085 GTGACTTTTGGGCAGAGTCAA 5105 |||||||||||||||| |||| Sbjct 7157355 GTGACTTTTGGGCAGAATCAA 7157375 Score = 120 bits (132), Expect = 2e-23 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 5171 TGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATC 5230 ||||||||||| ||||||||||||||||| ||||||||| | ||||| |||||||||||| Sbjct 7157378 TGGGCTGGATGTCAGCGTGTGGGAATCTCACCAGATACCAATAGAGTTCCTTATCACATC 7157437 Query 5231 CCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||||||| ||| ||||||| ||||| Sbjct 7157438 TCATTTGGTTCTCGGGTGCCAGGCACCAG 7157466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40206270006352