Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq134 96.9 2e-17 seq154 86.0 4e-14 >seq134 Length=5786112 Score = 96.9 bits (106), Expect = 2e-17 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| Sbjct 5061184 CTGCCCAGGCATAGTTCACCATCTTAAGGGTCCTAACGCGTGCGCTCATGCTCCACCTCC 5061125 Query 897 CCGACGCGGTCGGGT 911 || ||| | ||||| Sbjct 5061124 CCAGCGCAG-CGGGT 5061111 >seq154 Length=3898418 Score = 86.0 bits (94), Expect = 4e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||| |||||||||| ||||||||||| || |||| |||||||||||| Sbjct 3346163 CTGCCCAGGCATAGTGCACCATCTTTGCGGTCCTAACGCGTGTGCTCATGCTCCACCTCC 3346104 Query 897 CC 898 || Sbjct 3346103 CC 3346102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860478487204