Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq12 253 2e-63 >seq12 Length=50657735 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 49782775 AGGAGGTTTGAAATGGACCGGGAACCTAAAAGTGCCAGATACTGTGCTGAGTGTAATAGG 49782834 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||| |||||||||||||| |||||||||||||| || |||||||||||||||||||| Sbjct 49782835 CTGCACCCTGCTGAGGAAGGAGACTTTTGGGCAGAATCAAGCATGTTGGGCCTCAAAATT 49782894 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 49782895 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 49782937 Score = 122 bits (134), Expect = 7e-24 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||| || |||||||||||||||||||||||||| || | || Sbjct 49783025 CAGAGTGGGCTGGATGCCAGCGCGTTGGAATCTCCCCAGATACCCACAGAGTTCCCTATC 49783084 Query 5241 ACATCTCATTTGGTTCACGGATGCC 5265 |||||||||||||||| ||||| || Sbjct 49783085 ACATCTCATTTGGTTCTCGGATCCC 49783109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40111836278724