Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq12 259 4e-65 >seq12 Length=50657735 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 49782775 AGGAGGTTTGAAATGGACCGGGAACCTAAAAGTGCCAGATACTGTGCTGAGTGTAATAGG 49782834 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 49782835 CTGCACCCTGCTGAGGAAGGAGACTTTTGGGCAGAATCAAGCATGTTGGGCCTCAAAATT 49782894 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| ||||| ||||||| Sbjct 49782895 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGACATCACAG 49782937 Score = 138 bits (152), Expect = 9e-29 Identities = 87/94 (93%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||| || |||||||||||||||||||||||||| || |||| Sbjct 49783025 CAGAGTGGGCTGGATGCCAGCGCGTTGGAATCTCCCCAGATACCCACAGAGTTCCCTATC 49783084 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||||| ||||||||||| Sbjct 49783085 ACATCTCATTTGGTTCTCGGATCCCAGGTACCAG 49783118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40204621095832