Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Marmota_20marmota_20marmota_20[refseq_20GCF_5F001458135.1_202015-11- 20] 14,543 sequences; 2,510,587,379 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq2305 114 7e-23 seq18 89.7 3e-15 >seq2305 Length=4908 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| Sbjct 980 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGCGCGCTCGTGCTCCACCTCC 1039 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 1040 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 1066 >seq18 Length=40650429 Score = 89.7 bits (98), Expect = 3e-15 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||| || |||||||||| | |||||| ||||||||||||| Sbjct 35589345 CTGCCCAGGCATAGTTCACCATTGTTGGGGTCCTAACACGTGCGCTAGTGCTCCACCTCC 35589286 Query 897 CCGACGCGGTCGGG 910 || ||||| |||| Sbjct 35589285 CCAGCGCGG-CGGG 35589273 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860370952414