Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq3515 392 3e-105 SEQ15275 318 5e-83 seq1507 259 4e-65 seq100 158 1e-34 SEQ20382 149 5e-32 seq192 116 3e-22 seq181 107 2e-19 >seq3515 Length=167482 Score = 392 bits (434), Expect = 3e-105 Identities = 247/267 (93%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 34870 ATGTGTAGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAATGGATTGGGAACCTAAGAGT 34929 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||||||||||||||| |||||| ||||||||||||||||||| | |||||||||| Sbjct 34930 GCCAGATACTGTGCTGAGTGCAATAGGTTGCATCCTGCTGAGGAAGGAGCCTTTTGGGCA 34989 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||| || Sbjct 34990 GAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTCTAC 35049 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| Sbjct 35050 GATATCACAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCCCCAGATACCCACTGAGTT 35109 Query 5234 CCTTGTCACATCTCATTTGGTTCACGG 5260 |||| ||||| ||||||||||| ||| Sbjct 35110 CCTTACCACATTTCATTTGGTTCTCGG 35136 >SEQ15275 Length=11231 Score = 318 bits (352), Expect = 5e-83 Identities = 237/282 (84%), Gaps = 19/282 (7%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 8254 ATGTGTAGTCCATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCAGGAACCTAAGAGT 8313 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||| |||||| |||||||||||||||||||| ||||| |||||||| ||| Sbjct 8314 GCCAGATACTGTGTTGAGTGCAATAGGCTGCATCCTGCTGATGAAGGAGACTTTTGTGCA 8373 Query 5114 GAGTCGAGCA-------------------TGTTGGGCCTCAAAATCACCTACTTTGCGCT 5154 || | | | ||||||||||||| |||||||||||| |||| Sbjct 8374 AAGCCAAAAACAGTCTTTTGGCCCAAGACTGTTGGGCCTCAAGATCACCTACTTTACGCT 8433 Query 5155 GATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTC 5214 ||||||||||||||| ||||| |||||| ||||| |||||||||||||||||||||||| Sbjct 8434 GATGGATGGAAAGGTCTATGACATCACAAAGTGGCCTGGATGCCAGCGTGTGGGAATCTT 8493 Query 5215 CCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTC 5256 ||||||| ||||||||| |||| ||||||||||||||||| Sbjct 8494 TCCAGATATCCACAGAGTTCCTTACCACATCTCATTTGGTTC 8535 >seq1507 Length=381581 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 103109 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGCAATAGG 103050 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 103049 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 102990 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| || |||||||||| Sbjct 102989 ACCTACTTTGCACTGATGGATGGAAAGGTCTACGATATCACAG 102947 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 278473 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGCAATAGG 278532 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| Sbjct 278533 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 278592 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| || |||||||||| Sbjct 278593 ACCTACTTTGCACTGATGGATGGAAAGGTCTACGATATCACAG 278635 Score = 118 bits (130), Expect = 8e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| | Sbjct 102875 CAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCCCCAGATACCCACCGAGTTCCTTACC 102816 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 102815 ACATCTCATTTGGTTCTCGG 102796 Score = 118 bits (130), Expect = 8e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| | Sbjct 278707 CAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCCCCAGATACCCACCGAGTTCCTTACC 278766 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 278767 ACATCTCATTTGGTTCTCGG 278786 >seq100 Length=1734892 Score = 158 bits (174), Expect = 1e-34 Identities = 180/240 (75%), Gaps = 15/240 (6%) Strand=Plus/Plus Query 5016 AGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTA 5075 || |||| || ||||| | ||| || || ||||| |||||||||||||| ||||||| Sbjct 1657150 AGTATAGAAGATTTGACGTAGACTATGAGCCCAAGAGAGCCAGATACTGTGCAGAGTGTA 1657209 Query 5076 ATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCA 5135 ||||||| |||| ||| || || ||||||||| |||| |||| ||||| Sbjct 1657210 ATAGGCTACATCTTGCAGA-------CAC----AGGCAGAGTCAAGCACTTTGGTCCTCA 1657258 Query 5136 AAATC---ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTG 5192 | ||| | ||| ||| ||||||||||||||| | ||||| |||||||| ||||| | Sbjct 1657259 AGATCAGTAGTTACAGTGCACTGATGGATGGAAAGATCTATGACATCACAGACTGGGCAG 1657318 Query 5193 GATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTG 5252 ||| |||| || |||||||| | |||||||| ||||| || | |||||||||| ||| Sbjct 1657319 GATTCCAGTGTTCGGGAATCT-CTTGGATACCCATAGAGTTCCATATCACATCTCACTTG 1657377 >SEQ20382 Length=6116 Score = 149 bits (164), Expect = 5e-32 Identities = 192/262 (73%), Gaps = 5/262 (2%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| ||||||| |||||||| |||||| |||| | ||| | |||||||| | Sbjct 3688 ATGTGTAGCTGATGCCAAGGAAAGCACAGGAGGATTGACACAAACCAGAAACCTAAG--T 3631 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 | |||||||| || | |||| |||||| | ||||| || | |||||||||||| Sbjct 3630 GACAGATACTTCATGGACTATAAT--GCTGCAAGCCACTGAGAAAAGAGACTTTTGGGCA 3573 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||| | ||||||||||| |||| | ||||||| || |||||| || |||| ||| Sbjct 3572 GAGGCAAGCATGTTGGGTCTCATGGTTCCCTACTTGGCACTGATGAATTGAAAACACTAT 3513 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 | |||| |||||| || ||| || | ||||||||| || ||| ||||| ||| Sbjct 3512 GGCATCATGGAGTGGTCTTGATTGCACTGCATGGGAATCTTCCTAGACACCCAGAGATGT 3453 Query 5234 CCTTGTCACATCTCATTTGGTT 5255 |||| ||| || | |||| ||| Sbjct 3452 CCTTATCAAAT-TTATTTTGTT 3432 >seq192 Length=1355088 Score = 116 bits (128), Expect = 3e-22 Identities = 183/256 (71%), Gaps = 7/256 (3%) Strand=Plus/Plus Query 5000 AGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGA 5059 ||| | ||||| |||| || || ||| ||| |||| | | ||| || ||| || Sbjct 1237220 AGCTGGTGCCAAGGAA-GCCTAACAGGCCTGAGGTGGAACATGCACCCCAGCGTGTG-GA 1237277 Query 5060 TACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTC- 5118 | |||||||||| | || | || | | ||||| | |||| ||| | || |||| | Sbjct 1237278 TTCTGTGCTGAGGGCAACACGCCACGTTCTGCTCGGCAAGGAGACCTGTG--CAGAAGCT 1237335 Query 5119 GAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATAT 5178 ||||| | || ||||| ||||| |||| || | || |||||||||| ||||| || Sbjct 1237336 GAGCACGCTGCAACTCAAGATCACGCACTTGGCACAGACACATGGAAAGGTCTATGACAT 1237395 Query 5179 CACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTG 5238 || |||| |||||| ||||||| | ||||||||||| || |||| |||||| || | Sbjct 1237396 CATGGAGTAGGCTGGCTGCCAGCACGGGGGAATCTCCCAAGTTACC--CAGAGTTCCCTA 1237453 Query 5239 TCACATCTCATTTGGT 5254 ||||| ||| |||||| Sbjct 1237454 TCACACCTCGTTTGGT 1237469 >seq181 Length=1381130 Score = 107 bits (118), Expect = 2e-19 Identities = 175/248 (71%), Gaps = 28/248 (11%) Strand=Plus/Plus Query 5009 CAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCT 5068 || ||||||| | ||||||||||||| || || ||||| || ||||||| Sbjct 267868 CAAGGAAAGCTTCAGAGGTTTGAAATGCACT-------TACAAGTGCTGGACACTGTGCC 267920 Query 5069 GAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTG 5128 || ||| ||||| ||||||| |||| ||| || | ||||||||| Sbjct 267921 AAGCCTAAC---------CCTGCGAAGGAAGGAGACTG--GGGTAG--TAAAGCATGTTG 267967 Query 5129 GGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGG 5188 || ||||| |||||||||| | | ||| ||||||||| || ||||| || |||||||| Sbjct 267968 GGTCTCAATATCACCTACTCT--GATGAGGGATGGAAAAGTCTATGACAT--CAGAGTGG 268023 Query 5189 GCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCA 5248 | | ||| ||||| || |||||||||||| || | ||| | || | ||||||| || Sbjct 268024 GATAGATTCCAGC--ATGAGAATCTCCCCAG--ACACTCAGCATTCCATATCACATCGCA 268079 Query 5249 TTTGGTTC 5256 ||||||| Sbjct 268080 ATTGGTTC 268087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40087351517724