Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meriones_20unguiculatus_20[refseq_20GCF_5F002204375.1_202017-06-21] 68,793 sequences; 2,523,124,066 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq3515 410 1e-110 SEQ15275 340 1e-89 seq1507 262 3e-66 seq100 163 2e-36 SEQ20382 158 1e-34 seq181 131 1e-26 seq192 118 9e-23 seq120 89.7 4e-14 SEQ12114 78.8 7e-11 >seq3515 Length=167482 Score = 410 bits (454), Expect = 1e-110 Identities = 268/295 (91%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| | |||||||| | |||||||||||||||||| ||||||||||||||||| Sbjct 34856 CAATGAACGCTATGATGTGTAGCCGATGCCAGGGAAAGCACAGGAGGTTTGAAATGGATT 34915 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| Sbjct 34916 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGCAATAGGTTGCATCCTGCTGAGGAAG 34975 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | | ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 34976 GAGCCTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATCACCTACTTTGCACTGATGG 35035 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 35036 ATGGAAAGGTCTACGATATCACAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCCCCAG 35095 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||||| |||| ||||| ||||| |||||||||| ||| | || || ||||| Sbjct 35096 ATACCCACTGAGTTCCTTACCACATTTCATTTGGTTCTCGGGTTCCCGGCACCAG 35150 >SEQ15275 Length=11231 Score = 340 bits (376), Expect = 1e-89 Identities = 261/314 (83%), Gaps = 19/314 (6%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| || |||||||| | | ||||||||||||||||||||||||||||||||||| Sbjct 8240 CAATGAACACTATGATGTGTAGTCCATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 8299 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| Sbjct 8300 AGGAACCTAAGAGTGCCAGATACTGTGTTGAGTGCAATAGGCTGCATCCTGCTGATGAAG 8359 Query 5085 GTGACTTTTGGGCAGAGTCAAGCA-------------------TGTTGGGCCTCAAAATC 5125 | |||||||| ||| || ||| | ||||||||||||| ||| Sbjct 8360 GAGACTTTTGTGCAAAGCCAAAAACAGTCTTTTGGCCCAAGACTGTTGGGCCTCAAGATC 8419 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAG 5185 ||||||||| ||||||||||||||||||| ||||| |||||| ||||| ||||||||||| Sbjct 8420 ACCTACTTTACGCTGATGGATGGAAAGGTCTATGACATCACAAAGTGGCCTGGATGCCAG 8479 Query 5186 CGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGG 5245 ||||||||||||| ||||||| ||||||||| ||||| |||||| |||||||||| | | Sbjct 8480 CGTGTGGGAATCTTTCCAGATATCCACAGAGTTCCTTACCACATCTCATTTGGTTCTCAG 8539 Query 5246 ATGCCAGGTACCAG 5259 | || || ||||| Sbjct 8540 GTTCCTGGCACCAG 8553 >seq1507 Length=381581 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 103109 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGCAATAGG 103050 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 103049 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 102990 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| || |||||||||| Sbjct 102989 ACCTACTTTGCACTGATGGATGGAAAGGTCTACGATATCACAG 102947 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 278473 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGCAATAGG 278532 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 278533 TTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 278592 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| || |||||||||| Sbjct 278593 ACCTACTTTGCACTGATGGATGGAAAGGTCTACGATATCACAG 278635 Score = 118 bits (130), Expect = 9e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| | Sbjct 102875 CAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCCCCAGATACCCACCGAGTTCCTTACC 102816 Query 5226 ACATCCCATTTGGTTCACGG 5245 ||||| |||||||||| ||| Sbjct 102815 ACATCTCATTTGGTTCTCGG 102796 Score = 118 bits (130), Expect = 9e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||| | Sbjct 278707 CAGAGTGGGCTGGATGTCAGCGTGTGGGAATCTCCCCAGATACCCACCGAGTTCCTTACC 278766 Query 5226 ACATCCCATTTGGTTCACGG 5245 ||||| |||||||||| ||| Sbjct 278767 ACATCTCATTTGGTTCTCGG 278786 >seq100 Length=1734892 Score = 163 bits (180), Expect = 2e-36 Identities = 181/240 (75%), Gaps = 15/240 (6%) Strand=Plus/Plus Query 5001 AGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTA 5060 || |||| || ||||| | ||| || || ||||| |||||||||||||| ||||||| Sbjct 1657150 AGTATAGAAGATTTGACGTAGACTATGAGCCCAAGAGAGCCAGATACTGTGCAGAGTGTA 1657209 Query 5061 ATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCA 5120 ||||||| |||| ||| || || |||||||||||||| |||| ||||| Sbjct 1657210 ATAGGCTACATCTTGCAGA-------CAC----AGGCAGAGTCAAGCACTTTGGTCCTCA 1657258 Query 5121 AAATC---ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTG 5177 | ||| | ||| ||| ||||||||||||||| | ||||| |||||||| ||||| | Sbjct 1657259 AGATCAGTAGTTACAGTGCACTGATGGATGGAAAGATCTATGACATCACAGACTGGGCAG 1657318 Query 5178 GATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCATTTG 5237 ||| |||| || |||||||| | |||||||| ||||| || ||||||||| || ||| Sbjct 1657319 GATTCCAGTGTTCGGGAATCT-CTTGGATACCCATAGAGTTCCATATCACATCTCACTTG 1657377 >SEQ20382 Length=6116 Score = 158 bits (174), Expect = 1e-34 Identities = 192/260 (74%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 4970 AATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAA 5029 |||| |||||||| | | ||||||| |||||||| |||||| |||| | ||| | || Sbjct 3697 AATATTATGATGTGTAGCTGATGCCAAGGAAAGCACAGGAGGATTGACACAAACCAGAAA 3638 Query 5030 CCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGAC 5089 |||||| || |||||||| || | |||| |||||| | ||||| || | ||| Sbjct 3637 CCTAAG--TGACAGATACTTCATGGACTATAAT--GCTGCAAGCCACTGAGAAAAGAGAC 3582 Query 5090 TTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGA 5149 |||||||||||| ||||||||||||| |||| | ||||||| || |||||| || || Sbjct 3581 TTTTGGGCAGAGGCAAGCATGTTGGGTCTCATGGTTCCCTACTTGGCACTGATGAATTGA 3522 Query 5150 AAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACC 5209 || |||| |||| |||||| || ||| || | ||||||||| || ||| ||| Sbjct 3521 AAACACTATGGCATCATGGAGTGGTCTTGATTGCACTGCATGGGAATCTTCCTAGACACC 3462 Query 5210 CACAGAGTCCCTTATCACAT 5229 || ||| |||||||| || Sbjct 3461 CAGAGATGTCCTTATCAAAT 3442 >seq181 Length=1381130 Score = 131 bits (144), Expect = 1e-26 Identities = 211/298 (71%), Gaps = 29/298 (10%) Strand=Plus/Plus Query 4976 ATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG 5035 |||||| || | | | || ||||||| | ||||||||||||| || || Sbjct 267850 ATGATGCACAGCTGTTATCAAGGAAAGCTTCAGAGGTTTGAAATGCACT-------TACA 267902 Query 5036 AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGG 5095 ||||| || ||||||| || ||| ||||| ||||||| |||| || Sbjct 267903 AGTGCTGGACACTGTGCCAAGCCTAAC---------CCTGCGAAGGAAGGAGACTG--GG 267951 Query 5096 GCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTG 5155 | || | |||||||||||| ||||| |||||||||| | | ||| ||||||||| || Sbjct 267952 GTAG--TAAAGCATGTTGGGTCTCAATATCACCTACTCT--GATGAGGGATGGAAAAGTC 268007 Query 5156 TATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGA 5215 ||||| || ||||||||| | ||| ||||| || |||||||||||| || | ||| Sbjct 268008 TATGACAT--CAGAGTGGGATAGATTCCAGC--ATGAGAATCTCCCCAG--ACACTCAGC 268061 Query 5216 GTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 | || ||||||||| || ||||||| || | ||||| ||||| | ||| |||||| Sbjct 268062 ATTCCATATCACATCGCAATTGGTTCTGGGTTACCAGGGACCAGTGGTCAGAAGAGAG 268119 >seq192 Length=1355088 Score = 118 bits (130), Expect = 9e-23 Identities = 196/276 (71%), Gaps = 9/276 (3%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 || |||| ||||||| || | | | ||||| |||| || || ||| ||| |||| | Sbjct 1237202 CAGTGAACACGATGACGT--AGCTGGTGCCAAGGAA-GCCTAACAGGCCTGAGGTGGAAC 1237258 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 | ||| || ||| ||| |||||||||| | || | || | | ||||| | ||| Sbjct 1237259 ATGCACCCCAGCGTGTG-GATTCTGTGCTGAGGGCAACACGCCACGTTCTGCTCGGCAAG 1237317 Query 5085 GTGACTTTTGGGCAGAGTCA-AGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATG 5143 | ||| | || |||| | |||| | || ||||| ||||| |||| || | || Sbjct 1237318 GAGACCTGTG--CAGAAGCTGAGCACGCTGCAACTCAAGATCACGCACTTGGCACAGACA 1237375 Query 5144 GATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCA 5203 |||||||||| ||||| |||| |||| |||||| ||||||| | ||||||||||| | Sbjct 1237376 CATGGAAAGGTCTATGACATCATGGAGTAGGCTGGCTGCCAGCACGGGGGAATCTCCCAA 1237435 Query 5204 GATACCCACAGAGTCCCTTATCACATCCCATTTGGT 5239 | |||| |||||| || ||||||| | | |||||| Sbjct 1237436 GTTACC--CAGAGTTCCCTATCACACCTCGTTTGGT 1237469 >seq120 Length=1615918 Score = 89.7 bits (98), Expect = 4e-14 Identities = 193/292 (66%), Gaps = 35/292 (12%) Strand=Plus/Minus Query 4968 TGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGG 5027 |||| || |||| | | | | || || |||||||||||||| | ||| | || | || Sbjct 1346813 TGAACACTATGAGGCGTAGCTGAGGCGTAGGAAAGCATAGGAGATATGAGAGAGATCAGG 1346754 Query 5028 AACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTG 5087 || ||||||||||| | ||| ||||||| | | |||| ||||| || || |||| | Sbjct 1346753 AAACTAAGAGTGCCTGGTACCATGCTGAGGATGGTGGGCTACATCCCACTAAGAAAGGAG 1346694 Query 5088 ACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATG 5147 || ||||||||| |||||||| | || || Sbjct 1346693 AC--TTGGGCAGATGCAAGCATG-----------------------------GGTGTGTG 1346665 Query 5148 GAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATA 5207 |||| | ||||| ||||||||||||||||||| |||| |||| ||| | || |||| Sbjct 1346664 AAAAGAT-TATGACATCACAGAGTGGGCTGGATTACAGCATGTGCAAATAT-CCTGGATA 1346607 Query 5208 CCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 || |||||| | | ||||||| | |||| || | | | |||| || ||| Sbjct 1346606 CC--CAGAGTTGCCTCTCACATCTTAGTTGGCTCTCAGGTACCAGATATCAG 1346557 >SEQ12114 Length=22453 Score = 78.8 bits (86), Expect = 7e-11 Identities = 102/141 (72%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 5074 TGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTT 5133 |||| | |||| |||||||||| || ||||||||||| ||| |||||| | ||| || Sbjct 3479 TGCTTAAGAAGATGACTTTTGGACAACATCAAGCATGTTTGGCTTCAAAACTAGCTAATT 3538 Query 5134 TGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGG 5193 | | | || || ||| |||||||| | |||||| | | |||||| | || ||| | Sbjct 3539 TTCATTTTTGCATTAAAATGTGTATGACAACACAGAATAGACTGGATTCAAGACTGTAAG 3598 Query 5194 AATCTCCCCAGATACCCACAG 5214 ||||||| ||| ||||| Sbjct 3599 GATCTCCCATGATGTACACAG 3619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40180079697832