Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq94 241 1e-59 seq190 205 7e-49 seq34 165 7e-37 seq32 145 6e-31 seq4 120 2e-23 >seq94 Length=9671536 Score = 241 bits (266), Expect = 1e-59 Identities = 151/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | Sbjct 2832367 AGGAGGTTTGAAATGGACCGAGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAAG 2832308 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 || || ||||||||||| || ||||||||||||||||| ||||||||||||||||| ||| Sbjct 2832307 CTTCACCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 2832248 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 2832247 ACCTACTTTGCACTGATGGACGGAAAGGTCTATGATATCACAG 2832205 Score = 113 bits (124), Expect = 4e-21 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||| ||||| ||||| ||||||||||| |||| | Sbjct 2832119 CAGAGTGGGCTGGATGCCAGCGTGTGGGGATCTCTCCAGACACCCACAGAGTTCCTTACC 2832060 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 2832059 ACATCTCATTTGGTTCTCGG 2832040 >seq190 Length=3147427 Score = 205 bits (226), Expect = 7e-49 Identities = 206/263 (78%), Gaps = 10/263 (4%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||||||||| |||||| |||||| |||| ||| ||| ||||||||||| Sbjct 410702 ATGTGTAGCCGATGCAGAGGAAAGTGTAGGAGACTTGAGATG-ACCATGAACCTAAGAGA 410644 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTG----CATCCTGCTGAGGAAGGTGACTTTTG 5109 ||||||| ||||||||||||| |||| || ||| || |||||||||| ||| ||| Sbjct 410643 ACCAGATATTGTGCTGAGTGTAGTAGGTTGCATACATGCTACTGAGGAAGGAGAC--TTG 410586 Query 5110 GGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGT 5169 |||||| || | ||||||| |||||| |||| ||| || | |||||| ||||||| | Sbjct 410585 GGCAGATTCAAACATGTTGTGCCTCATGATCAGTTACATTACTCTGATGAGTGGAAAGAT 410526 Query 5170 GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAG 5229 ||||| ||||| ||||||| || | ||||| |||||||||| || |||||| |||| Sbjct 410525 CTATGACATCAC--AGTGGGCAGGCTTCCAGCATGTGGGAATC-ACCTGGATACCTACAG 410469 Query 5230 AGTCCCTTGTCACATCTCATTTG 5252 ||| || | |||||||||| ||| Sbjct 410468 AGTTCCATATCACATCTCAGTTG 410446 >seq34 Length=19385306 Score = 165 bits (182), Expect = 7e-37 Identities = 195/262 (74%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 |||| ||| ||| || ||||| ||| | | |||| ||| ||| | | ||||| || Sbjct 5829804 ATGTTTAGCTAATGGCAAGGAAAAGTTAGAAAGGTTGATATGAACCAGATATCTAAGTGT 5829745 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||| || | |||| | ||| | | |||| || | ||| |||||||| Sbjct 5829744 --CAGATACTACATGGAATATAAT-GACTGGAAGCCAATGAGAAAAGAGACATTTGGGCA 5829688 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||| ||||||||||||||||| ||||||||||||| | |||||||||||||| ||| Sbjct 5829687 GAGGAAAGCATGTTGGGCCTCAAGGTCACCTACTTTGCATTAATGGATGGAAAGGTATAT 5829628 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 | |||||| |||||| || ||| | |||||||||| | ||||||||||||| | Sbjct 5829627 GGCATCACACTTTGGGCTAGACTCCACTGAATGGGAATCTCTCTAGATACCCACAGACTT 5829568 Query 5234 CCTTGTCACATCTCATTTGGTT 5255 |||| |||||| |||||||||| Sbjct 5829567 CCTTATCACATTTCATTTGGTT 5829546 >seq32 Length=18220204 Score = 145 bits (160), Expect = 6e-31 Identities = 189/258 (73%), Gaps = 24/258 (9%) Strand=Plus/Minus Query 4999 CAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAG 5058 |||| |||| || ||||||| | | |||||||| || ||| || || ||||||||||| Sbjct 347035 CAGCTGATGTCAAGGAAAGCTTCAGGGGTTTGAATTGCACCAGGCACTTAAGAGTGCCA- 346977 Query 5059 ATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTC 5118 || ||||||| || | |||||||||||||| |||||| || || Sbjct 346976 -----------AGGGTAATAGACTATACCCTGCTGAGGAAGGAGACTTT--GGAGTAGCA 346930 Query 5119 GAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATAT 5178 ||||||||||||||||| ||||| | | ||| |||||| ||| || || ||||| || Sbjct 346929 AAGCATGTTGGGCCTCAAGATCACTTCCCTTGTACTGATGAATG--AAAGTCTATGACAT 346872 Query 5179 CACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTG 5238 ||||||||| ||||||||| | ||||||||| ||||||| |||||| || | Sbjct 346871 --CAGAGTGGG--AGATGCCAGC--ATAAGAATCTCCCTAGATACC--CAGAGTTCCATA 346820 Query 5239 TCACATCTCATTTGGTTC 5256 ||||| |||||||||| Sbjct 346819 CCACATGACATTTGGTTC 346802 >seq4 Length=37932696 Score = 120 bits (132), Expect = 2e-23 Identities = 199/281 (71%), Gaps = 26/281 (9%) Strand=Plus/Minus Query 4981 CAACTTTGAGGGTATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCG 5040 ||| | ||| | ||||| ||| ||||| |||||| ||||| ||||| || || | Sbjct 12210039 CAAATCTGATGATATGT--AGCTAATGCCTAGGAAAGGC-AGGAGATTTGAGATAGATCA 12209983 Query 5041 GGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGC-TGAGGAAG 5099 ||||||||||||| ||||| ||||||| |||||| ||| |||| |||||||| Sbjct 12209982 GGAACCTAAGAGTTCCAGACACTGTGC------TAATAGATAACATTCTGCTTGAGGAAG 12209929 Query 5100 GTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5159 | || ||||| || || |||| || |||| |||| || ||| || Sbjct 12209928 GAGA----TGGGCTGATCTAAGAATGTCAGG-TTCAAGATCA--------GCACTGGAGG 12209882 Query 5160 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5219 |||||| | ||||| ||||||||| |||||||| ||||| |||| | |||| || | Sbjct 12209881 ATGGAA--GATTATGACGTCACAGAGTTGGCTGGATTCCAGCATGTGAGCATCT-CCTGG 12209825 Query 5220 ATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTCACGG 5260 ||||||| | || || | |||||||||| ||| ||| ||| Sbjct 12209824 ATACCCATGGGGTTCCATATCACATCTCAGTTGATTCTCGG 12209784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40108703583312