Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mesocricetus_20auratus_20[refseq_20GCF_5F000349665.1_202013-03-29] 21,484 sequences; 2,504,925,039 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq94 244 9e-61 seq190 219 3e-53 seq34 172 4e-39 seq32 158 1e-34 seq4 131 1e-26 >seq94 Length=9671536 Score = 244 bits (270), Expect = 9e-61 Identities = 152/163 (93%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | Sbjct 2832367 AGGAGGTTTGAAATGGACCGAGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAACAAG 2832308 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 || || ||||||||||| || ||||||||||||||||||||||||||||||||||| ||| Sbjct 2832307 CTTCACCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAGATC 2832248 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| |||||||| |||||||| ||||||||||||| Sbjct 2832247 ACCTACTTTGCACTGATGGACGGAAAGGTCTATGATATCACAG 2832205 Score = 120 bits (132), Expect = 2e-23 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||| | Sbjct 2832119 CAGAGTGGGCTGGATGCCAGCGTGTGGGGATCTCTCCAGACACCCACAGAGTTCCTTACC 2832060 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| ||||| ||||| Sbjct 2832059 ACATCTCATTTGGTTCTCGGGGACCAGGCACCAG 2832026 >seq190 Length=3147427 Score = 219 bits (242), Expect = 3e-53 Identities = 231/298 (78%), Gaps = 11/298 (4%) Strand=Plus/Minus Query 4966 AATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCG 5025 |||| |||| ||||||| | ||||||| |||||| |||||| |||| ||| ||| Sbjct 410715 AATGGATACTGTGATGTGTAGCCGATGCAGAGGAAAGTGTAGGAGACTTGAGATG-ACCA 410657 Query 5026 GGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTG----CATCCTGCTGAGG 5081 ||||||||||| ||||||| ||||||||||||| |||| || ||| || |||||| Sbjct 410656 TGAACCTAAGAGAACCAGATATTGTGCTGAGTGTAGTAGGTTGCATACATGCTACTGAGG 410597 Query 5082 AAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGA 5141 |||| ||| ||||||||| |||| ||||||| |||||| |||| ||| || | |||| Sbjct 410596 AAGGAGAC--TTGGGCAGATTCAAACATGTTGTGCCTCATGATCAGTTACATTACTCTGA 410539 Query 5142 TGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCC 5201 || ||||||| | ||||| ||||| ||||||| || | ||||| |||||||||| || Sbjct 410538 TGAGTGGAAAGATCTATGACATCAC--AGTGGGCAGGCTTCCAGCATGTGGGAATC-ACC 410482 Query 5202 CAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||| ||||||| || ||||||||| || ||| || || | |||||||||| Sbjct 410481 TGGATACCTACAGAGTTCCATATCACATCTCAGTTGACTCTTGG-TAGCAGGTACCAG 410425 >seq34 Length=19385306 Score = 172 bits (190), Expect = 4e-39 Identities = 202/271 (75%), Gaps = 3/271 (1%) Strand=Plus/Minus Query 4970 AATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAA 5029 |||| ||||||| | | ||| || ||||| ||| | | |||| ||| ||| | | Sbjct 5829813 AATATAATGATGTTTAGCTAATGGCAAGGAAAAGTTAGAAAGGTTGATATGAACCAGATA 5829754 Query 5030 CCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGAC 5089 ||||| || |||||||| || | |||| | ||| | | |||| || | ||| Sbjct 5829753 TCTAAGTGT--CAGATACTACATGGAATATAAT-GACTGGAAGCCAATGAGAAAAGAGAC 5829697 Query 5090 TTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGA 5149 ||||||||||| |||||||||||||||||| ||||||||||||| | ||||||||| Sbjct 5829696 ATTTGGGCAGAGGAAAGCATGTTGGGCCTCAAGGTCACCTACTTTGCATTAATGGATGGA 5829637 Query 5150 AAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACC 5209 ||||| |||| |||||| |||||| || ||| | |||||||||| | ||||||| Sbjct 5829636 AAGGTATATGGCATCACACTTTGGGCTAGACTCCACTGAATGGGAATCTCTCTAGATACC 5829577 Query 5210 CACAGAGTCCCTTATCACATCCCATTTGGTT 5240 |||||| | ||||||||||| ||||||||| Sbjct 5829576 CACAGACTTCCTTATCACATTTCATTTGGTT 5829546 >seq32 Length=18220204 Score = 158 bits (174), Expect = 1e-34 Identities = 209/285 (73%), Gaps = 25/285 (9%) Strand=Plus/Minus Query 4989 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACT 5048 |||| || ||||||| | | |||||||| || ||| || || ||||||||||| Sbjct 347030 GATGTCAAGGAAAGCTTCAGGGGTTTGAATTGCACCAGGCACTTAAGAGTGCCA------ 346977 Query 5049 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCA 5108 || ||||||| || | |||||||||||||| |||||| | | || ||||| Sbjct 346976 ------AGGGTAATAGACTATACCCTGCTGAGGAAGGAGACTTTGGAGTAGCA--AAGCA 346925 Query 5109 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||| ||||| | | ||| |||||| ||| || || ||||| || ||| Sbjct 346924 TGTTGGGCCTCAAGATCACTTCCCTTGTACTGATGAATG--AAAGTCTATGACAT--CAG 346869 Query 5169 AGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACA 5228 |||||| ||||||||| | ||||||||| ||||||| |||||| || || |||| Sbjct 346868 AGTGGG--AGATGCCAGC--ATAAGAATCTCCCTAGATACC--CAGAGTTCCATACCACA 346815 Query 5229 TCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 | |||||||||| | | | ||||||||| | ||| |||||| Sbjct 346814 TGACATTTGGTTCTGAGTTACTAGGTACCAGTGGTCAGAAGAGAG 346770 >seq4 Length=37932696 Score = 131 bits (144), Expect = 1e-26 Identities = 202/283 (71%), Gaps = 24/283 (8%) Strand=Plus/Minus Query 4975 GATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAA 5034 |||||| || | | ||||| |||||| ||||| ||||| || || | ||||||||| Sbjct 12210032 GATGATATGTAGCTAATGCCTAGGAAAGGC-AGGAGATTTGAGATAGATCAGGAACCTAA 12209974 Query 5035 GAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGC-TGAGGAAGGTGACTTTT 5093 |||| ||||| ||||||| |||||| ||| |||| ||||||||| || | Sbjct 12209973 GAGTTCCAGACACTGTGC------TAATAGATAACATTCTGCTTGAGGAAGGAGA----T 12209924 Query 5094 GGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGG 5153 |||| || ||| |||| || |||| |||| || ||| |||||||| | Sbjct 12209923 GGGCTGATCTAAGAATGTCAGG-TTCAAGATCA--------GCACTGGAGGATGGAA--G 12209875 Query 5154 TGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACA 5213 ||||| ||||||||| |||||||| ||||| |||| | |||| || |||||||| Sbjct 12209874 ATTATGACGTCACAGAGTTGGCTGGATTCCAGCATGTGAGCATCT-CCTGGATACCCATG 12209816 Query 5214 GAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTAC 5256 | || || ||||||||| || ||| ||| ||| | ||||| || Sbjct 12209815 GGGTTCCATATCACATCTCAGTTGATTCTCGGGTACCAGGCAC 12209773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40201481154016