Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq8061 185 7e-43 seq1734 156 3e-34 seq3322 100 2e-17 >seq8061 Length=334604 Score = 185 bits (204), Expect = 7e-43 Identities = 113/120 (94%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 5064 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCA 5123 |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| Sbjct 93124 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCA 93065 Query 5124 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 93064 TGCTGGGCCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 93005 Score = 113 bits (124), Expect = 4e-21 Identities = 73/80 (91%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| | Sbjct 92915 CAGAGTGGGCTGGATGCCAGCGTGTGGGGATCTCTCCAGATACCCACAGAGTTCCTTACC 92856 Query 5241 ACATCTCATTTGGTTCACGG 5260 | |||||||||||||| ||| Sbjct 92855 ATATCTCATTTGGTTCTCGG 92836 >seq1734 Length=1508457 Score = 156 bits (172), Expect = 3e-34 Identities = 184/245 (75%), Gaps = 17/245 (7%) Strand=Plus/Plus Query 5012 GGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAG 5071 || ||| |||||| ||||| || | | |||||| |||||| ||||||||||||||||| Sbjct 124807 GGGAAGTGTAGGAGATTTGAGATAGGTCAGGAACCCAAGAGTTCCAGATACTGTGCTGAG 124866 Query 5072 TGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCA----TGTT 5127 ||||||| ||| |||||| |||||||||| ||||| || | || | | || | Sbjct 124867 TGTAATAAGCTACATCCTCCTGAGGAAGGAGACTTGTGTG--GATGCAAACACATCAGGC 124924 Query 5128 GGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTG 5187 |||||||| |||| || ||| |||| ||| || | |||||| |||||||||| Sbjct 124925 AGGCCTCAAGATCA--------GCACTGGTGGACGGAGAGAT-TATGATGTCACAGAGTG 124975 Query 5188 GGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTC 5247 |||||||| ||||| |||||| |||| || |||| ||| || || || |||||||| Sbjct 124976 GGCTGGATTCCAGCATGTGGGCATCT-CCTGGATA-CCAGAGGGTTCCACACCACATCTC 125033 Query 5248 ATTTG 5252 ||||| Sbjct 125034 ATTTG 125038 >seq3322 Length=934599 Score = 100 bits (110), Expect = 2e-17 Identities = 172/249 (69%), Gaps = 33/249 (13%) Strand=Plus/Minus Query 5008 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5067 ||||||| || | ||||||||| ||| ||| || ||| | |||||| || |||| Sbjct 447869 CCAGGGAC-GCTTCAGAGGTTTGAGATGCACCAGGCACCCAGGAGTGCTGGACACTGCCA 447811 Query 5068 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTT 5127 |||| ||||| ||||| |||||||||||||| |||||| || ||| |||||||| Sbjct 447810 GGAGT--AATAGCCTGCACCCTGCTGAGGAAGGAGACTTT--GGAGTAGTAAAGCATGTT 447755 Query 5128 GGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTG 5187 || | ||||| |||||| |||||||||| | ||| || |||| | Sbjct 447754 GGAC--------------CTTTGTACTGATGAATGGAAAGGTCTGTGACAT--TAGAGAG 447711 Query 5188 GGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTC 5247 || ||||||||| | ||||||||| |||||| || |||||||| | Sbjct 447710 GGACAGATGCCAGC--AGGAGAATCTCCC----------CAGAGTTCCCTGTCACATGAC 447663 Query 5248 ATTTGGTTC 5256 ||||||||| Sbjct 447662 ATTTGGTTC 447654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40014502470936