Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq8061 190 2e-44 seq1734 178 1e-40 seq3322 118 9e-23 >seq8061 Length=334604 Score = 190 bits (210), Expect = 2e-44 Identities = 114/120 (95%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 5049 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCA 5108 |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 93124 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCA 93065 Query 5109 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 93064 TGCTGGGCCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 93005 Score = 125 bits (138), Expect = 6e-25 Identities = 84/94 (89%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| | Sbjct 92915 CAGAGTGGGCTGGATGCCAGCGTGTGGGGATCTCTCCAGATACCCACAGAGTTCCTTACC 92856 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | ||| |||||||||| ||| | ||||| ||||| Sbjct 92855 ATATCTCATTTGGTTCTCGGGTACCAGGCACCAG 92822 >seq1734 Length=1508457 Score = 178 bits (196), Expect = 1e-40 Identities = 221/299 (74%), Gaps = 23/299 (8%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||| |||| | ||| |||||| || | || ||| |||||| ||||| || | | Sbjct 124781 CAACGAATCCTATGGTGTGCAGCCTA------GGGAAGTGTAGGAGATTTGAGATAGGTC 124834 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||| |||||| |||||||||||||||||||||||| ||| |||||| ||||||||| Sbjct 124835 AGGAACCCAAGAGTTCCAGATACTGTGCTGAGTGTAATAAGCTACATCCTCCTGAGGAAG 124894 Query 5085 GTGACTTTTGGGCAGAGTCAAGCA----TGTTGGGCCTCAAAATCACCTACTTTGCGCTG 5140 | ||||| || | || ||| || | |||||||| |||| || ||| Sbjct 124895 GAGACTTGTGTG--GATGCAAACACATCAGGCAGGCCTCAAGATCA--------GCACTG 124944 Query 5141 ATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCC 5200 |||| ||| || | |||||| |||||||||||||||||| ||||| |||||| |||| | Sbjct 124945 GTGGACGGAGAGAT-TATGATGTCACAGAGTGGGCTGGATTCCAGCATGTGGGCATCT-C 125002 Query 5201 CCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | |||| ||| || || || | |||||| |||||| || |||| | ||||||||| Sbjct 125003 CTGGATA-CCAGAGGGTTCCACACCACATCTCATTTGACTCTTGGATACTAGGTACCAG 125060 >seq3322 Length=934599 Score = 118 bits (130), Expect = 9e-23 Identities = 196/281 (70%), Gaps = 34/281 (12%) Strand=Plus/Minus Query 4993 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5052 ||||||| || | ||||||||| ||| ||| || ||| | |||||| || |||| Sbjct 447869 CCAGGGAC-GCTTCAGAGGTTTGAGATGCACCAGGCACCCAGGAGTGCTGGACACTGCCA 447811 Query 5053 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTT 5112 |||| ||||| ||||| |||||||||||||| |||||| || ||| ||||||||| Sbjct 447810 GGAGT--AATAGCCTGCACCCTGCTGAGGAAGGAGACTTT--GGAGTAGTAAAGCATGTT 447755 Query 5113 GGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTG 5172 || | ||||| |||||| |||||||||| | ||| || |||| | Sbjct 447754 GGAC--------------CTTTGTACTGATGAATGGAAAGGTCTGTGACAT--TAGAGAG 447711 Query 5173 GGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCC 5232 || ||||||||| | ||||||||| |||||| || | |||||| | Sbjct 447710 GGACAGATGCCAGC--AGGAGAATCTCCC----------CAGAGTTCCCTGTCACATGAC 447663 Query 5233 ATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 ||||||||| || | ||||||||||| | ||| |||||| Sbjct 447662 ATTTGGTTCTGGGTTACCAGGTACCAGTGGTCAGAAGAGAG 447622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40107062140048