Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_014373.1 Length=18940 Score E Sequences producing significant alignments: (Bits) Value seq448 93.3 5e-15 >seq448 Length=2307472 Score = 93.3 bits (102), Expect = 5e-15 Identities = 142/201 (71%), Gaps = 11/201 (5%) Strand=Plus/Minus Query 1317 TAGCACAACATGGAGAATATGCCCCGTTTGCTCGTCTGCTGAATCTATCTGGGGTTAATA 1376 ||||||| || ||||| |||| || |||| | | || ||||||||||||||||| | Sbjct 1682470 TAGCACACCACTGAGAAGATGCTCCTTTTGTATGAATACTTAATCTATCTGGGGTTAACA 1682411 Query 1377 ATCTTGAGCATGGGCTTTTCCCTCAACTTTCTGCAATTGCTTTGGGAGTAGCAACTG--- 1433 |||| ||||||||| | ||||||| || || || ||||| | ||||| || || | Sbjct 1682410 ATCTGGAGCATGGGATATTCCCTCGGCTATCAGCTATTGCCTCAGGAGTTGCGACAGCCA 1682351 Query 1434 ------CACATG-GGAG-CACTCTGGCTGGAGTCAATGTAGGAGAGCAATACCAACAACT 1485 ||| || |||| ||| ||||| || | |||||||| ||||| | ||||| Sbjct 1682350 TGGAGACACCTGAGGAGACACCTCAGCTGGTGTAACAGTAGGAGAACAATATCGGCAACT 1682291 Query 1486 GCGAGAAGCAGCCACTGAGGC 1506 | ||| || | | |||||| Sbjct 1682290 ACAAGAGGCCACAAGTGAGGC 1682270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60328594188978