Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_016144.1 Length=18927 Score E Sequences producing significant alignments: (Bits) Value seq2379 109 7e-20 >seq2379 Length=1737131 Score = 109 bits (120), Expect = 7e-20 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1352 AGAGTATGCACCATTTGCACGGCTCTTGAACCTCTCTGGTGTTAATAATCTAGAACATGG 1411 ||| ||||| ||| |||||| | ||||||| || || || | || ||||| || Sbjct 687756 AGAATATGCTGCATCCGCACGGAGTCTCAACCTCTGAGGAGTCAACAGCCTGGAACACGG 687815 Query 1412 CCTGTATCCTCAGCTCTCTGCCATCGCGCTTGGAGTTGCTACAGCTCATGGTAGCACACT 1471 |||| ||| ||| | || ||| | || | || | ||||| ||||||||| |||| || Sbjct 687816 ACTGTCTCCCCAGTTGTCAGCCGTTGCACCGGGCATAGCTACGGCTCATGGTGGCACTCT 687875 Query 1472 AGCAGGAGTTAATGTGAGTGAACAATACCAGCAACTCCGAGAGGCTGCAACAGAGGCTGA 1531 || || |||| ||| | |||||||||||||||||| | || ||||| | |||||||| Sbjct 687876 AGTGGGTGTTACTGTTGGAGAACAATACCAGCAACTCTGGGAAGCTGCCAGTGAGGCTGA 687935 Query 1532 GAAAC 1536 || || Sbjct 687936 GAGAC 687940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60287104916140