Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq131 253 2e-63 seq43 168 5e-38 seq15 136 3e-28 seq56 80.6 2e-11 >seq131 Length=1180924 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 169825 AGGAGGTTTGAAATGGATCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 169766 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 ||||||||||||||||| || ||||||||||||||||| |||||| |||||||||| ||| Sbjct 169765 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATC 169706 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 169705 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 169663 Score = 109 bits (120), Expect = 4e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 ||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||| | Sbjct 169573 CAGAGTGGGCTGGATGCCAGCGTGTAGGGATCTCTCCAGATACCCACAGAGTTCCTTACC 169514 Query 5241 ACATCTCATTTGGTTCACGG 5260 | |||||||||||||| ||| Sbjct 169513 ATATCTCATTTGGTTCTCGG 169494 >seq43 Length=8892892 Score = 168 bits (186), Expect = 5e-38 Identities = 184/240 (77%), Gaps = 17/240 (7%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||| ||||| || || | |||||| |||||| ||||| |||||||||||||||||||| Sbjct 1100634 AGGAGATTTGAGATAGATCAGGAACCCAAGAGTTCCAGACACTGTGCTGAGTGTAATAGG 1100693 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCAT----GTTGGGCCTCAA 5136 || ||||||||||||||||| ||| |||| ||| | ||||| | | |||||||| Sbjct 1100694 CTACATCCTGCTGAGGAAGGAGAC--GTGGGTAGATCCAAGCATGCCAGGTAGGCCTCAA 1100751 Query 5137 AATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATG 5196 |||| || ||| || |||| | | ||||| |||||||||||||||||| Sbjct 1100752 GATCA--------GCACTGGTGAATGG-AGGCATTATGACGTCACAGAGTGGGCTGGATT 1100802 Query 5197 CCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTC 5256 ||||| |||||| |||| || |||| ||| ||||| || | ||||||||| ||| ||| Sbjct 1100803 CCAGCATGTGGGCATCT-CCTGGATA-CCAGAGAGTTCCATACCACATCTCAGTTGATTC 1100860 >seq15 Length=35846924 Score = 136 bits (150), Expect = 3e-28 Identities = 166/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 5042 GAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGT 5101 |||||| ||||| ||| |||||||||||| | |||||||| | ||||| |||||| Sbjct 30391597 GAACCTCGGAGTGTG-GATGCTGTGCTGAGTGCA-TAGGCTGCCTTCTGCTCGGGAAGGA 30391540 Query 5102 GACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGAT 5161 ||| | ||||||| | ||| || | |||| | ||||| ||||| || |||| | Sbjct 30391539 GACCTG-GGGCAGAAAAG-GCAAGTGGAACCTCGAGATCACGTACTTGGCAAGGATGAGT 30391482 Query 5162 GGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGAT 5221 |||||||| | ||| || | ||||||||||| ||||||| || |||||||||| || | Sbjct 30391481 GGAAAGGTCTGTGACATAATGGAGTGGGCTGGGTGCCAGCATGGGGGAATCTCCTGAGTT 30391422 Query 5222 ACCCACAGAGTCCCTTGTCACATCTCATTTGGTTCACGGA 5261 ||| ||||||||| ||||| |||| | ||||||| || Sbjct 30391421 ACC--CAGAGTCCCCCATCACACCTCACTGGGTTCACAGA 30391384 >seq56 Length=5450039 Score = 80.6 bits (88), Expect = 2e-11 Identities = 167/249 (67%), Gaps = 36/249 (14%) Strand=Plus/Plus Query 5008 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5067 ||||||| || | ||||||||| ||| ||| || ||| | ||||| | |||| Sbjct 5015024 CCAGGGAT-GCTTCAGAGGTTTGAGATGCACCAGGCACCCAGTAGTGCTGAACACTGCCA 5015082 Query 5068 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTT 5127 |||| ||||| ||||| |||||||||||||| |||||| || ||| |||||||| Sbjct 5015083 GGAGT--AATAGCCTGCACCCTGCTGAGGAAGGAGACTTT--GGAGTAGTAAAGCATGTT 5015138 Query 5128 GGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTG 5187 || | ||||| |||||| |||||||||| | ||| || |||| | Sbjct 5015139 GGAC--------------CTTTGTACTGATGAATGGAAAGGTCTGTGACAT--TAGAGAG 5015182 Query 5188 GGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTC 5247 || ||||||||| |||||| || |||||| || | |||||| | Sbjct 5015183 GGACAGATGCCAGC-----AGAATCT----------CCTCAGAGTTCCCTATCACATGAC 5015227 Query 5248 ATTTGGTTC 5256 ||||||||| Sbjct 5015228 ATTTGGTTC 5015236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40115540811780