Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq131 259 4e-65 seq43 187 2e-43 seq15 136 3e-28 seq56 107 2e-19 >seq131 Length=1180924 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 169825 AGGAGGTTTGAAATGGATCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 169766 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 ||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||| Sbjct 169765 CTGCATCCTGCTGAGGAGGGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATC 169706 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 169705 ACCTACTTTGCACTGATGGATGGAAAGGTCTATGATATCACAG 169663 Score = 127 bits (140), Expect = 2e-25 Identities = 104/125 (83%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 ||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||| | Sbjct 169573 CAGAGTGGGCTGGATGCCAGCGTGTAGGGATCTCTCCAGATACCCACAGAGTTCCTTACC 169514 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTGAGGGTT 5285 | ||| |||||||||| ||| | ||||||||||| | | | ||||| | |||| | || Sbjct 169513 ATATCTCATTTGGTTCTCGGGTACCAGGTACCAGTGGTC-GGCAGAGGTAGGTGATGCTT 169455 Query 5286 TTCTC 5290 |||| Sbjct 169454 CTCTC 169450 >seq43 Length=8892892 Score = 187 bits (206), Expect = 2e-43 Identities = 223/299 (75%), Gaps = 23/299 (8%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||| |||| | ||| |||||| || | | || ||| |||| ||||| || || | Sbjct 1100599 CAACGAATCCTATGGTGTGCAGCCTAGGGAAGTGAA------GGAGATTTGAGATAGATC 1100652 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 1100653 AGGAACCCAAGAGTTCCAGACACTGTGCTGAGTGTAATAGGCTACATCCTGCTGAGGAAG 1100712 Query 5085 GTGACTTTTGGGCAGAGTCAAGCAT----GTTGGGCCTCAAAATCACCTACTTTGCGCTG 5140 | ||| |||| ||| ||||||| | | |||||||| |||| || ||| Sbjct 1100713 GAGAC--GTGGGTAGATCCAAGCATGCCAGGTAGGCCTCAAGATCA--------GCACTG 1100762 Query 5141 ATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCC 5200 || |||| | | ||||| |||||||||||||||||| ||||| |||||| |||| | Sbjct 1100763 GTGAATGG-AGGCATTATGACGTCACAGAGTGGGCTGGATTCCAGCATGTGGGCATCT-C 1100820 Query 5201 CCAGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | |||| ||| ||||| || || |||||| || ||| ||| || | | ||||||||| Sbjct 1100821 CTGGATA-CCAGAGAGTTCCATACCACATCTCAGTTGATTCCTGGGTACTAGGTACCAG 1100878 >seq15 Length=35846924 Score = 136 bits (150), Expect = 3e-28 Identities = 166/220 (75%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 5027 GAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGT 5086 |||||| ||||| ||| |||||||||||| | |||||||| | ||||| |||||| Sbjct 30391597 GAACCTCGGAGTGTG-GATGCTGTGCTGAGTGCA-TAGGCTGCCTTCTGCTCGGGAAGGA 30391540 Query 5087 GACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGAT 5146 ||| | ||||||| | ||| || | |||| | ||||| ||||| || |||| | Sbjct 30391539 GACCTG-GGGCAGAAA-AGGCAAGTGGAACCTCGAGATCACGTACTTGGCAAGGATGAGT 30391482 Query 5147 GGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGAT 5206 |||||||| | ||| || | ||||||||||| ||||||| || |||||||||| || | Sbjct 30391481 GGAAAGGTCTGTGACATAATGGAGTGGGCTGGGTGCCAGCATGGGGGAATCTCCTGAGTT 30391422 Query 5207 ACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGA 5246 ||| ||||||||| |||||| | || | ||||||| || Sbjct 30391421 ACC--CAGAGTCCCCCATCACACCTCACTGGGTTCACAGA 30391384 >seq56 Length=5450039 Score = 107 bits (118), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 37/281 (13%) Strand=Plus/Plus Query 4993 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5052 ||||||| || | ||||||||| ||| ||| || ||| | ||||| | |||| Sbjct 5015024 CCAGGGAT-GCTTCAGAGGTTTGAGATGCACCAGGCACCCAGTAGTGCTGAACACTGCCA 5015082 Query 5053 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTT 5112 |||| ||||| ||||| |||||||||||||| |||||| || ||| ||||||||| Sbjct 5015083 GGAGT--AATAGCCTGCACCCTGCTGAGGAAGGAGACTTT--GGAGTAGTAAAGCATGTT 5015138 Query 5113 GGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTG 5172 || | ||||| |||||| |||||||||| | ||| || |||| | Sbjct 5015139 GGAC--------------CTTTGTACTGATGAATGGAAAGGTCTGTGACAT--TAGAGAG 5015182 Query 5173 GGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCC 5232 || ||||||||| |||||| || |||||| || |||||||| | Sbjct 5015183 GGACAGATGCCAGC-----AGAATCT----------CCTCAGAGTTCCCTATCACATGAC 5015227 Query 5233 ATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 ||||||||| || | ||||||||||| | ||| |||||| Sbjct 5015228 ATTTGGTTCTGGGTTACCAGGTACCAGTGGTCAGAAGAGAG 5015268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40208334198040