Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_004161.1 Length=18891 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 5e-15 >seq2 Length=98408828 Score = 93.3 bits (102), Expect = 5e-15 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 1337 GAATATGCCCCTTTTGCTCGCCTTCTCAATCTCTCGGGAGTTAACAACCTAGAACATGGT 1396 |||||||| | | || || ||||||||||| ||||| |||| ||| ||||| | Sbjct 27471663 GAATATGCTCAGTCCGCACGGAGTCTCAATCTCTGAGGAGTCAACAGCCTGGAACACAGA 27471722 Query 1397 CTCTACCCACAGTTATCAGCAATTGCTCTTGGAGTTGCCACAGCACATGGTAGCACCCTT 1456 || | || ||||| ||||| ||||| | || || || || |||||| |||| || Sbjct 27471723 CTGTTTCCCCAGTTGTCAGCCATTGCACCGGGCACAGCTACGGCTCATGGTGGCACTCTA 27471782 Query 1457 GCAGGAGTTAATGTTGGTGAGCAGTATCAGCAGCTTAGAGAGGCTGCCACTGAAGCTGAG 1516 | || |||| |||||| || || || |||||| | || | ||||||| | | |||||| Sbjct 27471783 GTGGGTGTTACTGTTGGAGAACAATACCAGCAGTTCTGATAAGCTGCCAGTAAGGCTGAG 27471842 Query 1517 A 1517 | Sbjct 27471843 A 27471843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60328380716670