Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_016144.1 Length=18927 Score E Sequences producing significant alignments: (Bits) Value seq2 82.4 9e-12 >seq2 Length=98408828 Score = 82.4 bits (90), Expect = 9e-12 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 1352 AGAGTATGCACCATTTGCACGGCTCTTGAACCTCTCTGGTGTTAATAATCTAGAACATGG 1411 ||| ||||| | | |||||| | || |||| || || || | || ||||| | Sbjct 27471662 AGAATATGCTCAGTCCGCACGGAGTCTCAATCTCTGAGGAGTCAACAGCCTGGAACACAG 27471721 Query 1412 CCTGTATCCTCAGCTCTCTGCCATCGCGCTTGGAGTTGCTACAGCTCATGGTAGCACACT 1471 |||| ||| ||| | || ||||| || | || ||||| ||||||||| |||| || Sbjct 27471722 ACTGTTTCCCCAGTTGTCAGCCATTGCACCGGGCACAGCTACGGCTCATGGTGGCACTCT 27471781 Query 1472 AGCAGGAGTTAATGTGAGTGAACAATACCAGCAACTCCGAGAGGCTGCAACAGAGGCTGA 1531 || || |||| ||| | |||||||||||||| || || | ||||| | ||||||| Sbjct 27471782 AGTGGGTGTTACTGTTGGAGAACAATACCAGCAGTTCTGATAAGCTGCCAGTAAGGCTGA 27471841 Query 1532 GAAAC 1536 || || Sbjct 27471842 GAGAC 27471846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60443572278450