Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq233 102 5e-19 seq18 75.2 6e-11 >seq233 Length=141111 Score = 102 bits (112), Expect = 5e-19 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| Sbjct 7045 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAATGTGTGCACTCGTGCTCCACCTCC 7104 Query 897 CCGACGCGGTCGGG 910 ||| ||| || ||| Sbjct 7105 CCGGCGCAGTGGGG 7118 >seq18 Length=51076971 Score = 75.2 bits (82), Expect = 6e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| || | || ||||||| |||| Sbjct 6603253 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACATGTGTGTTCATGCTCCATCTCC 6603312 Query 897 C 897 | Sbjct 6603313 C 6603313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860613104830