Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq4 410 1e-110 seq3 396 2e-106 seq12 327 9e-86 seq7 183 2e-42 seq25 125 6e-25 seq6 123 2e-24 >seq4 Length=117747451 Score = 410 bits (454), Expect = 1e-110 Identities = 251/267 (94%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 49442122 ATGTGCAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGT 49442181 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||| Sbjct 49442182 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTCTGGGCA 49442241 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 49442242 GAGTCGAGCATGCTGGGCCTCAAGATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 49442301 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 49442302 GACATCACAGAGTGGGCTGGATGCCAACGTGTGGGTATCTCCCCAGATACCCACAGAGTT 49442361 Query 5234 CCTTGTCACATCTCATTTGGTTCACGG 5260 |||| |||||| |||||||||| ||| Sbjct 49442362 CCTTACCACATCACATTTGGTTCTCGG 49442388 >seq3 Length=122627250 Score = 396 bits (438), Expect = 2e-106 Identities = 248/267 (93%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 121591805 ATGTGCAGCAAATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGT 121591746 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||| Sbjct 121591745 GCCAGATACTGTGCTGAGTGTAACAGGTTGCATCCTGCTGAGGAAGGAGACTTCTGGGCA 121591686 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 |||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 121591685 GAGTGGAGCATGCTGGGCCTCAAGATCACCTACTTTGCACTGATGGATGGAAAGGTGTAT 121591626 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| Sbjct 121591625 GACATCACAGAGTGGGTTGGATGCCAGCGTGTGGGTATCTCCCCAGATACCCACAGAGTT 121591566 Query 5234 CCTTGTCACATCTCATTTGGTTCACGG 5260 |||| ||||||||||||||||| ||| Sbjct 121591565 CCTTACCACATCTCATTTGGTTCTCGG 121591539 Score = 260 bits (288), Expect = 1e-65 Identities = 156/164 (95%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5020 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5079 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 121183536 TAGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAG 121183595 Query 5080 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAAT 5139 ||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||| || Sbjct 121183596 GCTGCATCCTGCTGAGGAAGGAGACTTCTGGGCAGAGTCGAGCATGCTGGGCCTCAAGAT 121183655 Query 5140 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 121183656 CACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 121183699 >seq12 Length=86406422 Score = 327 bits (362), Expect = 9e-86 Identities = 228/265 (86%), Gaps = 22/265 (8%) Strand=Plus/Minus Query 4996 GTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGC 5055 ||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1464176 GTGCAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAGATGGACCGGGAACCCAAGAGTGC 1464117 Query 5056 CAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGA 5115 ||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| Sbjct 1464116 CAGATACCGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGGAGACTTCTGGGTAGA 1464057 Query 5116 GTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGA 5175 |||||||||| |||||||||||||| |||||||||||| Sbjct 1464056 GTCGAGCATG----------------------CTGCGCTGATGGATGAAAAGGTGTATGA 1464019 Query 5176 TATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCC 5235 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1464018 TATCACAGAGTGGGCTGGATGCCAGCGTGTGGGTATCTCCCCAGATACCCACAGAGTCCC 1463959 Query 5236 TTGTCACATCTCATTTGGTTCACGG 5260 || ||||||||||||||||| ||| Sbjct 1463958 TTACCACATCTCATTTGGTTCTCGG 1463934 >seq7 Length=113551381 Score = 183 bits (202), Expect = 2e-42 Identities = 205/267 (77%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 4997 TGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCC 5056 || |||| | ||||| |||| ||| ||| | | |||||| |||||||||||| Sbjct 107503428 TGTAGCCAACTCCAGG--AAGCCTAGCAGGCTCGGGGTGGACCAAGAACCTAAGAGTATG 107503371 Query 5057 AGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAG 5116 | | ||| ||||| || || |||||| || ||||| ||||||| ||||| | ||||| Sbjct 107503370 -GCTTCTGAGCTGAATGCAACAGGCTGTATTCTGCTCAGGAAGGAGACTTG-GAGCAGAA 107503313 Query 5117 TCGA-GCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGA 5175 | | ||||| || |||||||||||| ||| | || |||||| |||||||| ||||| Sbjct 107503312 CCTAAGCATGCTGAACCTCAAAATCACTCCCTTGGGGCAGATGGACGGAAAGGTCTATGA 107503253 Query 5176 TATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCC 5235 | ||| |||| |||||||||||||| || ||||||||||| || |||| |||||| || Sbjct 107503252 TGTCAGAGAGGAGGCTGGATGCCAGCATG-GGGAATCTCCCAAGTTACC--CAGAGTTCC 107503196 Query 5236 TTGTCACATCTCATTTGGTTCACGGAT 5262 | ||| |||||||||||||||| ||| Sbjct 107503195 CTATCAAATCTCATTTGGTTCACAGAT 107503169 >seq25 Length=158037523 Score = 125 bits (138), Expect = 6e-25 Identities = 185/256 (72%), Gaps = 11/256 (4%) Strand=Plus/Plus Query 5004 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG-TGCCAGATAC 5062 ||||||| ||||||||||| ||| |||| | || | || |||| ||| ||||| Sbjct 118479363 GATGCCAAGGAAAGCATAGAAGGATTGATACAAACAAGAAA---AAGACATGCAAGATAT 118479419 Query 5063 TGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGC 5122 | |||| |||| ||||||| | ||||| |||| | |||||||| |||| | ||| Sbjct 118479420 TACATGGAGTATAAT-GGCTGCAAGCCACTGAGAAAGGAGCCTTTTGGGTAGAGGCAAGC 118479478 Query 5123 ATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAG---GTGTATGATATC 5179 ||||| | |||||| || |||||||| | |||| ||||| || ||| ||| Sbjct 118479479 ATGTTAG-CCTCAAGGTCCTCTACTTTGTAATAATGG--GGAAAAAAAGTTTATTGCATC 118479535 Query 5180 ACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGT 5239 | | ||| |||||| ||| |||||||||||| |||||| ||||||| |||| | Sbjct 118479536 AGGAAATGGTCTGGATTCCACTACATGGGAATCTCCCTAGATACTGACAGAGTTCCTTAT 118479595 Query 5240 CACATCTCATTTGGTT 5255 ||||| |||||||||| Sbjct 118479596 CACATTTCATTTGGTT 118479611 >seq6 Length=112758220 Score = 123 bits (136), Expect = 2e-24 Identities = 183/255 (72%), Gaps = 6/255 (2%) Strand=Plus/Plus Query 5004 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG--AGTGCCAGATA 5061 ||||| |||||||| |||| | | | || |||| ||||||||| ||| || || Sbjct 95124284 GATGCAAGGGAAAGAGTAGGTGACTCTAGATAGACCAGGAACCTAACCCAGTACCTGACT 95124343 Query 5062 CTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAG 5121 || |||||||| ||||||| |||||| |||||||||| ||| || | || | Sbjct 95124344 CTCTGCTGAGTACTATAGGCTCCATCCTACTGAGGAAGGAAACTCA--GGATGGCTCATG 95124401 Query 5122 CATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCAC 5181 |||||||||||||| |||| |||||||| ||| | | |||| | ||||| || | Sbjct 95124402 CATGTTGGGCCTCATGATCAGTTACTTTGCTCTGGTAAACATAAAGAT-TATGACATAAT 95124460 Query 5182 AGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCA 5241 |||||| ||| || | || |||| || ||||| || ||||| ||||||| || ||| Sbjct 95124461 AGAGTGAGCTAAATTCTAGTATGTGAGATTCTCCTCA-ATACCTACAGAGTTCCACATCA 95124519 Query 5242 CATCTCATTTGGTTC 5256 |||| | |||||| Sbjct 95124520 TATCTGAGGTGGTTC 95124534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40116972888216