Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq4 426 1e-115 seq3 407 1e-109 seq12 345 3e-91 seq7 187 2e-43 seq6 152 4e-33 seq25 131 1e-26 >seq4 Length=117747451 Score = 426 bits (472), Expect = 1e-115 Identities = 268/289 (93%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| ||||||||||||| | ||||||| |||||||||||||||||||||||||||| Sbjct 49442108 CAATGAACACGATGATGTGCAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACC 49442167 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 49442168 GGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAG 49442227 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||| Sbjct 49442228 GAGACTTCTGGGCAGAGTCGAGCATGCTGGGCCTCAAGATCACCTACTTTGCGCTGATGG 49442287 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||| Sbjct 49442288 ATGGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAACGTGTGGGTATCTCCCCAG 49442347 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGG 5253 ||||||||||||| ||||| |||||| |||||||||| ||| | || || Sbjct 49442348 ATACCCACAGAGTTCCTTACCACATCACATTTGGTTCTCGGGTACCGGG 49442396 >seq3 Length=122627250 Score = 407 bits (450), Expect = 1e-109 Identities = 267/295 (91%), Gaps = 0/295 (0%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||| || || |||||||||| | |||||| |||||||||||||||||||||||||||| Sbjct 121591819 CAATAAACACTATGATGTGCAGCAAATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACC 121591760 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| Sbjct 121591759 GGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGTTGCATCCTGCTGAGGAAG 121591700 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||| |||||||||| |||||| |||||||||| |||||||||||||| ||||||| Sbjct 121591699 GAGACTTCTGGGCAGAGTGGAGCATGCTGGGCCTCAAGATCACCTACTTTGCACTGATGG 121591640 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| Sbjct 121591639 ATGGAAAGGTGTATGACATCACAGAGTGGGTTGGATGCCAGCGTGTGGGTATCTCCCCAG 121591580 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||||||| ||||| |||||| |||||||||| ||| | || || ||||| Sbjct 121591579 ATACCCACAGAGTTCCTTACCACATCTCATTTGGTTCTCGGGTACCNGGCACCAG 121591525 Score = 255 bits (282), Expect = 5e-64 Identities = 155/164 (95%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 5005 TAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAG 5064 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct 121183536 TAGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAG 121183595 Query 5065 GCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAAT 5124 ||||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||| || Sbjct 121183596 GCTGCATCCTGCTGAGGAAGGAGACTTCTGGGCAGAGTCGAGCATGCTGGGCCTCAAGAT 121183655 Query 5125 CACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 121183656 CACCTACTTTGCACTGATGGATGGAAAGGTGTATGACATCACAG 121183699 >seq12 Length=86406422 Score = 345 bits (382), Expect = 3e-91 Identities = 250/295 (85%), Gaps = 22/295 (7%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| ||||||| ||||| | ||||||| |||||||||||||||||||| ||||||| Sbjct 1464192 CAATGAACACGATGACGTGCAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAGATGGACC 1464133 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 1464132 GGGAACCCAAGAGTGCCAGATACCGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAG 1464073 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||| |||| |||||| |||||| ||||||||||| Sbjct 1464072 GAGACTTCTGGGTAGAGTCGAGCATG----------------------CTGCGCTGATGG 1464035 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1464034 ATGAAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGTATCTCCCCAG 1463975 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||||||||||||| |||||| |||||||||| ||| | || || ||||| Sbjct 1463974 ATACCCACAGAGTCCCTTACCACATCTCATTTGGTTCTCGGGTACCGGGCACCAG 1463920 >seq7 Length=113551381 Score = 187 bits (206), Expect = 2e-43 Identities = 207/269 (77%), Gaps = 8/269 (3%) Strand=Plus/Minus Query 4993 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5052 ||||| |||| ||| ||| | | |||||| |||||||||||| | | ||| || Sbjct 107503417 CCAGG--AAGCCTAGCAGGCTCGGGGTGGACCAAGAACCTAAGAGTATG-GCTTCTGAGC 107503361 Query 5053 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTC-AAGCATGT 5111 ||| || || |||||| || ||||| ||||||| ||||| | ||||| | ||||||| Sbjct 107503360 TGAATGCAACAGGCTGTATTCTGCTCAGGAAGGAGACTTG-GAGCAGAACCTAAGCATGC 107503302 Query 5112 TGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGT 5171 || |||||||||||| ||| | || |||||| |||||||| |||||| ||| |||| Sbjct 107503301 TGAACCTCAAAATCACTCCCTTGGGGCAGATGGACGGAAAGGTCTATGATGTCAGAGAGG 107503242 Query 5172 GGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCC 5231 |||||||||||||| || ||||||||||| || |||| |||||| || ||||| ||| Sbjct 107503241 AGGCTGGATGCCAGCATG-GGGAATCTCCCAAGTTACC--CAGAGTTCCCTATCAAATCT 107503185 Query 5232 CATTTGGTTCACGGATGCCAGGTACCAGC 5260 |||||||||||| ||| ||| | |||| Sbjct 107503184 CATTTGGTTCACAGATATTAGGCATCAGC 107503156 >seq6 Length=112758220 Score = 152 bits (168), Expect = 4e-33 Identities = 214/296 (72%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||| |||| || | || ||| ||||| |||||||| |||| | | | || |||| Sbjct 95124260 CAATGGATACTATAAGGTATAACTGATGCAAGGGAAAGAGTAGGTGACTCTAGATAGACC 95124319 Query 5025 GGGAACCTAAG--AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGA 5082 ||||||||| ||| || || || |||||||| ||||||| |||||| ||||||| Sbjct 95124320 AGGAACCTAACCCAGTACCTGACTCTCTGCTGAGTACTATAGGCTCCATCCTACTGAGGA 95124379 Query 5083 AGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGAT 5142 ||| ||| || | ||| ||||||||||||||| |||| |||||||| ||| | Sbjct 95124380 AGGAAACTCA--GGATGGCTCATGCATGTTGGGCCTCATGATCAGTTACTTTGCTCTGGT 95124437 Query 5143 GGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCC 5202 | |||| | ||||| || | |||||| ||| || | || |||| || ||||| | Sbjct 95124438 AAACATAAAGAT-TATGACATAATAGAGTGAGCTAAATTCTAGTATGTGAGATTCTCCTC 95124496 Query 5203 AGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCA 5258 | ||||| ||||||| || |||| ||| | |||||| || | |||||||||| Sbjct 95124497 A-ATACCTACAGAGTTCCACATCATATCTGAGGTGGTTCTTGGGTACCAGGTACCA 95124551 >seq25 Length=158037523 Score = 131 bits (144), Expect = 1e-26 Identities = 193/267 (72%), Gaps = 11/267 (4%) Strand=Plus/Plus Query 4978 GATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 5037 ||||| || ||||||| ||||||||||| ||| |||| | || | || |||| Sbjct 118479352 GATGTTGAATTGATGCCAAGGAAAGCATAGAAGGATTGATACAAACAAGAAA---AAGAC 118479408 Query 5038 -TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGG 5096 ||| ||||| | |||| |||| ||||||| | ||||| |||| | |||||||| Sbjct 118479409 ATGCAAGATATTACATGGAGTATAAT-GGCTGCAAGCCACTGAGAAAGGAGCCTTTTGGG 118479467 Query 5097 CAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAG---G 5153 |||| |||||||||| | |||||| || |||||||| | |||| ||||| | Sbjct 118479468 TAGAGGCAAGCATGTTAG-CCTCAAGGTCCTCTACTTTGTAATAATGG--GGAAAAAAAG 118479524 Query 5154 TGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACA 5213 | ||| |||| | ||| |||||| ||| |||||||||||| |||||| ||| Sbjct 118479525 TTTATTGCATCAGGAAATGGTCTGGATTCCACTACATGGGAATCTCCCTAGATACTGACA 118479584 Query 5214 GAGTCCCTTATCACATCCCATTTGGTT 5240 |||| ||||||||||| ||||||||| Sbjct 118479585 GAGTTCCTTATCACATTTCATTTGGTT 118479611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40209769587088