Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20caroli_20[genbank_20GCA_5F900094665.2_202017-04-28] 3,162 sequences; 2,553,112,587 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 8e-16 seq997 89.7 3e-15 seq1 89.7 3e-15 seq5 86.0 4e-14 >seq9 Length=92629107 Score = 91.5 bits (100), Expect = 8e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||||||| |||||||| ||| | ||||||||||||||||| Sbjct 5257233 CTGCCCAGGCATAGTTCACCATCTTTTGGGTCCTAGCGCGTATGCTCGTGCTCCACCTCC 5257292 Query 897 CCG 899 ||| Sbjct 5257293 CCG 5257295 >seq997 Length=100386 Score = 89.7 bits (98), Expect = 3e-15 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||| |||||||||||||||||||||| ||||| || |||||| ||| |||||||||||| Sbjct 53031 CTGCTCAGGCATAGTTCACCATCTTTCAGGTCCCAAAGCATGCACTCATGCTCCACCTCC 52972 Query 897 CCGACGCGG 905 ||| |||| Sbjct 52971 CCGGTGCGG 52963 >seq1 Length=185492789 Score = 89.7 bits (98), Expect = 3e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||| |||||| ||||| || |||||||||| |||||||||||| Sbjct 141057055 CTGCCCAGGCATAGTTCACCTTCTTTCAGGTCCCAATGCATGCGCTCATGCTCCACCTCC 141057114 Query 897 CC 898 || Sbjct 141057115 CC 141057116 >seq5 Length=114734182 Score = 86.0 bits (94), Expect = 4e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| | | ||||||| ||||||||| Sbjct 49480407 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACTCGTATGCTCGTGTTCCACCTCC 49480348 Query 897 CC 898 || Sbjct 49480347 CC 49480346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860706714676