Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq27 262 3e-66 seq26 163 2e-36 seq30 131 1e-26 seq37 122 7e-24 seq31 114 1e-21 >seq27 Length=130694993 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 128816710 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 128816769 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| Sbjct 128816770 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCGAGCATGCTGGGCCTCAAGATC 128816829 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || |||||||||||||||||||||||||||||||| ||||||| Sbjct 128816830 ACTTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 128816872 Score = 118 bits (130), Expect = 9e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| | Sbjct 128816955 CAGAGTGGGCTGGATGCCAGCGTGTGGGTATCTCCCCAGATACTCACAGAGTTCCTTACC 128817014 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 128817015 ACATCTCATTTGGTTCTCGG 128817034 >seq26 Length=124595110 Score = 163 bits (180), Expect = 2e-36 Identities = 187/246 (76%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 5009 CAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCT 5068 || ||||||| | |||||||||||| | ||| || || ||||||||| || |||||||| Sbjct 99304984 CAAGGAAAGCTTTGGAGGTTTGAAACGCACCAGGCACTTAAGAGTGCTGGACACTGTGCT 99304925 Query 5069 GAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTG 5128 || |||||| ||| | ||| || || ||| ||| | || ||| | |||||| Sbjct 99304924 AAGCCTAATAGACTGTACCCTAATGGGGCAGGGGAC--TCGGAGGTAGTAAACCATGTTA 99304867 Query 5129 GGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGG 5188 |||||||| |||||||||| || ||||||| ||| ||||| ||||| || |||||||| Sbjct 99304866 GGCCTCAAGATCACCTACTGTGTACTGATGG-TGGGAAGGTCTATGACAT--CAGAGTGG 99304810 Query 5189 GCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCA 5248 | | |||| |||| || ||||||||| |||||| |||||| || | | ||||| || Sbjct 99304809 GATAGATGACAGC--ATGAGAATCTCCCAGGATACC--CAGAGTTCCATATTACATCACA 99304754 Query 5249 TTTGGT 5254 |||||| Sbjct 99304753 TTTGGT 99304748 >seq30 Length=120421639 Score = 131 bits (144), Expect = 1e-26 Identities = 188/259 (73%), Gaps = 11/259 (4%) Strand=Plus/Plus Query 5000 AGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG--AGTGCCA 5057 ||| ||||| ||| |||| |||| || || || |||| ||||||||| ||| || Sbjct 101397436 AGCTGATGCAAGGAAAAGTGTAGGTCATTCGAGATAGACCAGGAACCTAACCCAGTACCT 101397495 Query 5058 GATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGT 5117 || || |||||||| ||||||| |||||| | |||||||| |||| || | | Sbjct 101397496 GA--CTCTGCTGAGTACTATAGGCTCCATCCTACGGAGGAAGGAGACTCA--GGATGGCT 101397551 Query 5118 CGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATA 5177 | ||||||||||||||| |||| |||||||| ||||| || |||| | ||||| | Sbjct 101397552 CATGCATGTTGGGCCTCATGATCAGTTACTTTGCTCTGATAGACATAAAGAT-TATGACA 101397610 Query 5178 TCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTT 5237 | |||||||| ||| || | | |||| || |||| || ||||| ||||||| || Sbjct 101397611 TAACAGAGTGAGCTAAATTCTA---TGTGAGATTCTCTTCA-ATACCTACAGAGTTCCAC 101397666 Query 5238 GTCACATCTCATTTGGTTC 5256 |||||||| | |||||| Sbjct 101397667 ATCACATCTGAGGTGGTTC 101397685 >seq37 Length=171031299 Score = 122 bits (134), Expect = 7e-24 Identities = 184/257 (72%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 5004 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG-TGCCAGATAC 5062 ||||||| ||||||||||| ||| |||| | || | || |||| ||| ||||| Sbjct 129538001 GATGCCAAGGAAAGCATAGAAGGGTTGATACAAACAAGAAA---AAGACATGCAAGATAT 129538057 Query 5063 TGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGC 5122 | |||| ||| | ||||| | ||||| |||| | |||||||| |||| | || Sbjct 129538058 TACATGGAGTACAAT-GACTGCAAGCCACTGAGAAAGGAGCCTTTTGGGTAGAGGCAGGC 129538116 Query 5123 ATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAA----GGTGTATGATAT 5178 ||||||| ||||||| || |||||||| |||||| | ||| ||| ||| || Sbjct 129538117 ATGTTGG-CCTCAAAGTCCTCTACTTTGTAATGATGGGGGAAAAAAAAGGTTTATTGCAT 129538175 Query 5179 CACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTG 5238 || | | ||| |||||| ||| |||||||||||| ||| || ||||||| |||| Sbjct 129538176 CAGAAAATGGTCTGGATTCCACTACATGGGAATCTCCCTAGACACTGACAGAGTTCCTTA 129538235 Query 5239 TCACATCTCATTTGGTT 5255 |||||| ||||||| || Sbjct 129538236 TCACATTTCATTTGATT 129538252 >seq31 Length=124902244 Score = 114 bits (126), Expect = 1e-21 Identities = 199/287 (69%), Gaps = 28/287 (10%) Strand=Plus/Minus Query 4997 TGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCC 5056 || |||| | ||||| |||| ||| ||| ||| |||||| |||||||||||| Sbjct 118279383 TGTAGCCAACTCCAGG--AAGCTTAGCAGGCTTGGGGTGGACCACGAACCTAAGAGTATG 118279326 Query 5057 AGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAG 5116 | | ||| ||||| || || |||||| | ||||| ||||| | |||| | ||||| Sbjct 118279325 -GCTTCTGAGCTGAATGCAACAGGCTGTGTTCTGCTCAGGAAAGACACTTG-GAGCAGAA 118279268 Query 5117 TCGAG-CATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGT------ 5169 | | |||| || |||||||||||| ||| | || |||||||| ||||| Sbjct 118279267 CCTAAACATGCTGAACCTCAAAATCACTCCCTTGGGGCAGATGGATGCGAAGGTCTGTGA 118279208 Query 5170 --------------GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCC 5215 |||||| ||| |||| |||||||||||||| || |||| ||||| Sbjct 118279207 TGTCATAGAGTAGGCTATGATGTCATAGAGCAGGCTGGATGCCAGCATG-GGGAGTCTCC 118279149 Query 5216 CCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTCACGGAT 5262 | || |||| |||||| || | ||| | |||||||||||||| ||| Sbjct 118279148 CAAGTTACC--CAGAGTTCCCTATCAAACCTCATTTGGTTCACAGAT 118279104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40118306574276