Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq27 259 4e-65 seq26 181 9e-42 seq30 149 5e-32 seq37 127 2e-25 seq31 118 9e-23 >seq27 Length=130694993 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 128816710 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 128816769 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||| Sbjct 128816770 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCGAGCATGCTGGGCCTCAAGATC 128816829 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||||||||||||||||||||||||||| ||||||| Sbjct 128816830 ACTTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 128816872 Score = 127 bits (140), Expect = 2e-25 Identities = 98/115 (85%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| | Sbjct 128816955 CAGAGTGGGCTGGATGCCAGCGTGTGGGTATCTCCCCAGATACTCACAGAGTTCCTTACC 128817014 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTGA 5280 ||||| |||||||||| ||| | || || ||||| | || | ||||| | |||| Sbjct 128817015 ACATCTCATTTGGTTCTCGGGTACCCGGCACCAGTGGCC-GGCAGAGGTAGGTGA 128817068 >seq26 Length=124595110 Score = 181 bits (200), Expect = 9e-42 Identities = 212/280 (76%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 4994 CAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCT 5053 || ||||||| | |||||||||||| | ||| || || ||||||||| || |||||||| Sbjct 99304984 CAAGGAAAGCTTTGGAGGTTTGAAACGCACCAGGCACTTAAGAGTGCTGGACACTGTGCT 99304925 Query 5054 GAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTG 5113 || |||||| ||| | ||| || || ||| ||| | || ||| || |||||| Sbjct 99304924 AAGCCTAATAGACTGTACCCTAATGGGGCAGGGGAC--TCGGAGGTAGTAAACCATGTTA 99304867 Query 5114 GGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGG 5173 |||||||| |||||||||| || ||||||| ||| ||||| ||||| || |||||||| Sbjct 99304866 GGCCTCAAGATCACCTACTGTGTACTGATGG-TGGGAAGGTCTATGACAT--CAGAGTGG 99304810 Query 5174 GCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCA 5233 | | |||| |||| || ||||||||| |||||| |||||| || ||| ||||| || Sbjct 99304809 GATAGATGACAGC--ATGAGAATCTCCCAGGATACC--CAGAGTTCCATATTACATCACA 99304754 Query 5234 TTTGGTTCACGGATGCCAGGTACCAGCGA-CCAGAGAGAG 5272 |||||| | || | | || ||||| || ||| |||||| Sbjct 99304753 TTTGGTCCTGGGTTACTGGGGACCAGTGATCCAAAGAGAG 99304714 >seq30 Length=120421639 Score = 149 bits (164), Expect = 5e-32 Identities = 215/297 (72%), Gaps = 11/297 (4%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||| | |||| || | || | | ||||| ||| |||| |||| || || || |||| Sbjct 101397416 CAACGGATACTATAAGGTATAGCTGATGCAAGGAAAAGTGTAGGTCATTCGAGATAGACC 101397475 Query 5025 GGGAACCTAAG--AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGA 5082 ||||||||| ||| || || || |||||||| ||||||| |||||| | ||||| Sbjct 101397476 AGGAACCTAACCCAGTACCTGA--CTCTGCTGAGTACTATAGGCTCCATCCTACGGAGGA 101397533 Query 5083 AGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGAT 5142 ||| |||| || | ||| ||||||||||||||| |||| |||||||| ||||| Sbjct 101397534 AGGAGACTCA--GGATGGCTCATGCATGTTGGGCCTCATGATCAGTTACTTTGCTCTGAT 101397591 Query 5143 GGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCC 5202 || |||| | ||||| || |||||||| ||| || | | |||| || |||| | Sbjct 101397592 AGACATAAAGAT-TATGACATAACAGAGTGAGCTAAATTCTA---TGTGAGATTCTCTTC 101397647 Query 5203 AGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | ||||| ||||||| || |||||||| | |||||| || | ||||||||||| Sbjct 101397648 A-ATACCTACAGAGTTCCACATCACATCTGAGGTGGTTCTTGGGTACCAGGTACCAG 101397703 >seq37 Length=171031299 Score = 127 bits (140), Expect = 2e-25 Identities = 192/268 (72%), Gaps = 10/268 (4%) Strand=Plus/Plus Query 4978 GATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAG 5037 ||||| || ||||||| ||||||||||| ||| |||| | || | || |||| Sbjct 129537990 GATGTTGAATTGATGCCAAGGAAAGCATAGAAGGGTTGATACAAACAAGAAA---AAGAC 129538046 Query 5038 -TGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGG 5096 ||| ||||| | |||| ||| | ||||| | ||||| |||| | |||||||| Sbjct 129538047 ATGCAAGATATTACATGGAGTACAAT-GACTGCAAGCCACTGAGAAAGGAGCCTTTTGGG 129538105 Query 5097 CAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAA----G 5152 |||| || ||||||||| ||||||| || |||||||| |||||| | ||| | Sbjct 129538106 TAGAGGCAGGCATGTTGG-CCTCAAAGTCCTCTACTTTGTAATGATGGGGGAAAAAAAAG 129538164 Query 5153 GTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCAC 5212 || ||| |||| | | ||| |||||| ||| |||||||||||| ||| || || Sbjct 129538165 GTTTATTGCATCAGAAAATGGTCTGGATTCCACTACATGGGAATCTCCCTAGACACTGAC 129538224 Query 5213 AGAGTCCCTTATCACATCCCATTTGGTT 5240 ||||| ||||||||||| |||||| || Sbjct 129538225 AGAGTTCCTTATCACATTTCATTTGATT 129538252 >seq31 Length=124902244 Score = 118 bits (130), Expect = 9e-23 Identities = 193/276 (70%), Gaps = 28/276 (10%) Strand=Plus/Minus Query 4993 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5052 ||||| |||| ||| ||| ||| |||||| |||||||||||| | | ||| || Sbjct 118279372 CCAGG--AAGCTTAGCAGGCTTGGGGTGGACCACGAACCTAAGAGTATG-GCTTCTGAGC 118279316 Query 5053 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTC-AAGCATGT 5111 ||| || || |||||| | ||||| ||||| | |||| | ||||| | || |||| Sbjct 118279315 TGAATGCAACAGGCTGTGTTCTGCTCAGGAAAGACACTTG-GAGCAGAACCTAAACATGC 118279257 Query 5112 TGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGT----------------- 5154 || |||||||||||| ||| | || |||||||| ||||| Sbjct 118279256 TGAACCTCAAAATCACTCCCTTGGGGCAGATGGATGCGAAGGTCTGTGATGTCATAGAGT 118279197 Query 5155 ---GTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCA 5211 |||||| ||| |||| |||||||||||||| || |||| |||||| || |||| Sbjct 118279196 AGGCTATGATGTCATAGAGCAGGCTGGATGCCAGCATG-GGGAGTCTCCCAAGTTACC-- 118279140 Query 5212 CAGAGTCCCTTATCACATCCCATTTGGTTCACGGAT 5247 |||||| || ||||| | | |||||||||||| ||| Sbjct 118279139 CAGAGTTCCCTATCAAACCTCATTTGGTTCACAGAT 118279104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40211106358168