Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20musculus_20[refseq_20GCF_5F000001635.25_202016-06-29] 207 sequences; 2,807,715,301 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq33 118 6e-24 seq32 114 7e-23 seq175 105 4e-20 seq29 105 4e-20 seq8 96.9 2e-17 seq30 86.0 4e-14 seq26 75.2 6e-11 >seq33 Length=98207768 Score = 118 bits (130), Expect = 6e-24 Identities = 84/91 (92%), Gaps = 4/91 (4%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 57391455 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGTACGCTCGTGCTCCACCTCC 57391514 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 57391515 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 57391541 >seq32 Length=104043685 Score = 114 bits (126), Expect = 7e-23 Identities = 83/91 (91%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 86194940 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGTACGCTCGTGCTCCACCTCC 86194881 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| | ||| |||| || || |||||||||| Sbjct 86194880 CCGGCCCGG-CGGG-CG-AG-ACGGGCCGGT 86194854 >seq175 Length=161821 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||| ||||| |||||||||||||||| |||| |||||||||||||||| | Sbjct 78961 CTGCCCAGGCATACTTCACTATCTTTCGGGTCCTAAAGCATACGCTCGTGCTCCACCTTC 78902 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 78901 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 78875 >seq29 Length=120129022 Score = 105 bits (116), Expect = 4e-20 Identities = 64/68 (94%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 99645284 CTGCCCAGGCATAGTTCGTCATCTTTCGGGTCCTAACGCATACGCTCGTGCTCCACCTCC 99645225 Query 897 CCGACGCG 904 ||| |||| Sbjct 99645224 CCGGCGCG 99645217 Score = 89.7 bits (98), Expect = 3e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||| |||||||||||||||||| ||||||||||| | |||||||| ||||||||| Sbjct 54135201 CTGCCCAGTCATAGTTCACCATCTTTCAGGTCCTAACGCGTACGCTCGTGTTCCACCTCC 54135142 Query 897 CC 898 || Sbjct 54135141 CC 54135140 >seq8 Length=160039680 Score = 96.9 bits (106), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||| |||| ||||| |||||||||||||||| |||| |||||| ||||||||| | Sbjct 37481513 CTGCCCAGCCATACTTCACTATCTTTCGGGTCCTAAAGCATACGCTCGAGCTCCACCTTC 37481454 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| ||||| |||| || || |||||||||| Sbjct 37481453 CCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 37481427 >seq30 Length=120421639 Score = 86.0 bits (94), Expect = 4e-14 Identities = 60/69 (87%), Gaps = 6/69 (9%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||||| | | ||||||||||| Sbjct 44869978 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGTAC------GCTCCACCTCC 44870031 Query 897 CCGACGCGG 905 ||| ||||| Sbjct 44870032 CCGGCGCGG 44870040 >seq26 Length=124595110 Score = 75.2 bits (82), Expect = 6e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 || || ||| ||| ||||||||||||| |||||||| ||||| ||| ||||||||||||| Sbjct 3259316 CTTCCTAGGAATACTTCACCATCTTTCAGGTCCTAATGCATGTGCTTGTGCTCCACCTCC 3259375 Query 897 C 897 | Sbjct 3259376 C 3259376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860793893086