Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq4 390 9e-105 seq23 369 3e-98 seq12 259 4e-65 seq1 199 3e-47 seq13 168 5e-38 seq28 150 1e-32 seq14 149 5e-32 seq11 105 5e-19 >seq4 Length=164141553 Score = 390 bits (432), Expect = 9e-105 Identities = 247/267 (93%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 135034367 ATGTGCAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCCAAGAGT 135034426 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||| Sbjct 135034427 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGANGAAGGAGACTTTTGGGCA 135034486 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||||| | |||||||| |||||||||||||| ||||||||||||||||||||| Sbjct 135034487 GAGTCAAGCATGCTAGGCCTCAAGATCACCTACTTTGCCCTGATGGATGGAAAGGTGTAT 135034546 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 135034547 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAGATACC--CAGAGTT 135034604 Query 5234 CCTTGTCACATCTCATTTGGTTCACGG 5260 |||| || |||||||||||||| ||| Sbjct 135034605 CCTTACCATATCTCATTTGGTTCTCGG 135034631 Score = 379 bits (420), Expect = 2e-101 Identities = 246/267 (92%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| |||||| Sbjct 37588368 ATGTGCAGCAGATGCCAAGGAAAGCAT-GGAGGTTTGAAATGGACCGGGAACCCAAGAGT 37588426 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||| Sbjct 37588427 GCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAGA-GACTCCTGGGCA 37588485 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||||| | || ||||| ||||||||||||||||||||||||| |||||||||| Sbjct 37588486 GAGTCAAGCATGCTAGGTCTCAAGATCACCTACTTTGCGCTGATGGATGCAAAGGTGTAT 37588545 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 37588546 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAGATACCCACAGAGTT 37588605 Query 5234 CCTTGTCACATCTCATTTGGTTCACGG 5260 |||| ||||||||||||||||| ||| Sbjct 37588606 CCTTACCACATCTCATTTGGTTCTCGG 37588632 >seq23 Length=89631738 Score = 369 bits (408), Expect = 3e-98 Identities = 242/267 (91%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||||||| ||||||| |||||||||||||||||||||||| |||||||||| |||||| Sbjct 68271640 ATGTGCAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAAATGAACCGGGAACCCAAGAGT 68271699 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||| ||||| |||||| |||||||||||||||| |||| |||| | Sbjct 68271700 GCCAGATACTGTGCTGAATGTAACAGGCTGTATCCTGCTGAGGAAGGAAACTTCTGGGTA 68271759 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||| | | |||||||| |||| || |||||||||||||||||||||||||||| Sbjct 68271760 GAGTCAAGCAGGCTAGGCCTCAAGATCATCTTCTTTGCGCTGATGGATGGAAAGGTGTAT 68271819 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| Sbjct 68271820 GACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAGATACCCACGGAGTT 68271879 Query 5234 CCTTGTCACATCTCATTTGGTTCACGG 5260 |||| ||||||||||||||||| ||| Sbjct 68271880 CCTTACCACATCTCATTTGGTTCTCGG 68271906 >seq12 Length=92399829 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 48280232 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 48280173 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| ||||||||||||||||| |||||| | |||||||| ||| Sbjct 48280172 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGCTAGGCCTCAAGATC 48280113 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 48280112 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 48280070 Score = 127 bits (140), Expect = 2e-25 Identities = 76/80 (95%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | Sbjct 48279984 CAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAGATACCCACAGAGTCCCTTACC 48279925 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 48279924 ACATCTCATTTGGTTCTCGG 48279905 >seq1 Length=172151128 Score = 199 bits (220), Expect = 3e-47 Identities = 204/263 (78%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||| || | | |||||| |||| || ||||| || |||| |||| ||| ||| Sbjct 60512926 ATGTGTAGCCAATACAAAGGAAAGTATAGAAGATTTGAGATAGACCAGGAAACTAGGAGA 60512867 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||| ||||||| ||||||||| ||||||| || |||||| | Sbjct 60512866 GCCAGATACTGTGCTGAGTGTGATAGGCTCCATCCTGCTAAGGAAGGAGA--TTTGGGTA 60512809 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 || || ||| ||||| ||||| || |||| ||| ||||||||| | || | ||| Sbjct 60512808 GATTCAAGCCTGTTGCTACTCAAGAT-TGCTACATTGTACTGATGGATAGTCAGATCTAT 60512750 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||| || |||| ||||| || ||||||| | |||||||| |||| Sbjct 60512749 GACATCACAGAGTGAGCAGGATTCCAGCATGAAGGAATCT-CTTGGATACCCATGGAGTT 60512691 Query 5234 CCTTGTCACATCTCATTTGGTTC 5256 || || ||||||| |||| || Sbjct 60512690 CCACATCCCATCTCACTTGGCTC 60512668 >seq13 Length=116904986 Score = 168 bits (186), Expect = 5e-38 Identities = 188/246 (76%), Gaps = 9/246 (4%) Strand=Plus/Minus Query 5009 CAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCT 5068 || ||||||| | |||||| ||||||| |||||| || ||||||||| || ||||||| Sbjct 92655082 CAAGGAAAGCTT-GGAGGTCTGAAATGCACCGGGCACTTAAGAGTGCTGGACTCTGTGCT 92655024 Query 5069 GAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTG 5128 || |||||| ||| | |||| ||||| ||| ||| | ||| || | | |||||| Sbjct 92655023 AAGCCTAATAGACTGTACCCTGATGAGGCAGGGAACTCTGGGGTAG--TAAACCATGTTA 92654966 Query 5129 GGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGG 5188 ||| |||| |||||||||| || ||||||||||| | ||| ||||| || |||||||| Sbjct 92654965 GGCTTCAAGATCACCTACTGTGTACTGATGGATGGGAGGGTCTATGACAT--CAGAGTGG 92654908 Query 5189 GCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTCA 5248 | | ||||||||| || ||||||||| || ||| |||||| || | ||||| || Sbjct 92654907 GATAGATGCCAGC--ATGAGAATCTCCCAGGACACC--CAGAGTTCCATACTACATCACA 92654852 Query 5249 TTTGGT 5254 |||||| Sbjct 92654851 TTTGGT 92654846 >seq28 Length=148379591 Score = 150 bits (166), Expect = 1e-32 Identities = 187/251 (75%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 5004 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACT 5063 ||||||| ||||||||||| ||| |||| | || | |||| || | ||| ||| | | Sbjct 109014886 GATGCCAAGGAAAGCATAGAAGGGTTGATACAAACAAGAAACC-AACA-TGCAAGACATT 109014943 Query 5064 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCA 5123 |||| |||| ||||||| | ||||| |||| | ||||||||||||| | |||| Sbjct 109014944 AAATGGAGTATAAT-GGCTGCAAGCCACTGAGAAAGGAGCCTTTTGGGCAGAGGCAAGCA 109015002 Query 5124 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||| | |||||| || |||||||||| |||||||| ||| || ||| |||| Sbjct 109015003 TGTTAG-CCTCAAGGTCCCCTACTTTGCACTGATGGAAAAAAAAGTTTATTGCATCAGGA 109015061 Query 5184 AGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACA 5243 | ||| |||||| || | |||||||||||| ||| || ||||||| |||| ||||| Sbjct 109015062 AATGGTCTGGATTGCACTGCATGGGAATCTCCCTAGACACTGACAGAGTTCCTTATCACA 109015121 Query 5244 TCTCATTTGGT 5254 | ||||||||| Sbjct 109015122 TTTCATTTGGT 109015132 >seq14 Length=77350604 Score = 149 bits (164), Expect = 5e-32 Identities = 191/259 (74%), Gaps = 6/259 (2%) Strand=Plus/Plus Query 5000 AGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG--AGTGCCA 5057 ||| ||||| |||||||| | || | || || || |||| ||||||||| ||| || Sbjct 32221225 AGCTGATGCAAGGGAAAGTGTTGGCGATTCGAGATAGACCAGGAACCTAACTCAGTACCT 32221284 Query 5058 GATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGT 5117 || || |||||||| | |||||| |||||| |||||||||| |||| ||| || | Sbjct 32221285 GACTCTCTGCTGAGTACAGTAGGCTCCATCCTACTGAGGAAGGAGACTCA--GGCTGACT 32221342 Query 5118 CGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATA 5177 | ||||||||||||||| |||| |||||||| ||| | || || | | || || | Sbjct 32221343 CATGCATGTTGGGCCTCATGATCAGTTACTTTGCTCTGGTAGACATAATGAT-TACGACA 32221401 Query 5178 TCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTT 5237 |||||||||||||| ||| | || |||| || ||||| | |||||| || |||| | Sbjct 32221402 TCACAGAGTGGGCTAGATTCTAGTATGTGAGAGTCTCCTC-GATACCTACCGAGTTCTAC 32221460 Query 5238 GTCACATCTCATTTGGTTC 5256 ||||||| | |||||| Sbjct 32221461 ATCACATCAGAGGTGGTTC 32221479 >seq11 Length=111406228 Score = 105 bits (116), Expect = 5e-19 Identities = 149/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 4997 TGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCC 5056 || |||| | ||||| |||| ||| | ||| |||||| ||||| ||||||| Sbjct 105386609 TGTAGCCAACTCCAGG--AAGCCTAGCTCGCTTGGGGTGGACCAAGAACC-AAGAGTGTG 105386553 Query 5057 AGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAG 5116 | | ||| ||||| || || |||||| | ||||| ||||||| ||| | | ||||| Sbjct 105386552 -GCTTCTGAGCTGAATGCAACAGGCTGTGTTCTGCTCAGGAAGGAGACCTG-GAGCAGAA 105386495 Query 5117 TCGAG-CATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGA 5175 | | |||| || |||||||||||| ||| | || | ||||||||||||| ||||| Sbjct 105386494 CCTAAACATGCTGAACCTCAAAATCACTCCCTTGGGGCAGGTGGATGGAAAGGTCTATGA 105386435 Query 5176 TATCACAGAGTGGGCTGGATGCC 5198 | ||| ||||| ||||||||||| Sbjct 105386434 TGTCATAGAGTAGGCTGGATGCC 105386412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40117235112108