Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq4 417 7e-113 seq23 398 6e-107 seq12 262 3e-66 seq1 205 7e-49 seq13 181 9e-42 seq14 159 3e-35 seq28 154 1e-33 seq11 109 4e-20 >seq4 Length=164141553 Score = 417 bits (462), Expect = 7e-113 Identities = 278/307 (91%), Gaps = 3/307 (1%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| || |||||||||| | ||||||| |||||||||||||||||||||||||||| Sbjct 135034353 CAATGAACACTATGATGTGCAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAAATGGACC 135034412 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 135034413 GGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGANGAAG 135034472 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||||||||||||||||||||| | |||||||| |||||||||||||| ||||||| Sbjct 135034473 GAGACTTTTGGGCAGAGTCAAGCATGCTAGGCCTCAAGATCACCTACTTTGCCCTGATGG 135034532 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 135034533 ATGGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAG 135034592 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACC 5264 ||||| |||||| ||||| || ||| |||||||||| ||| | || || ||||| | || Sbjct 135034593 ATACC--CAGAGTTCCTTACCATATCTCATTTGGTTCTCGGGTACCGGGCACCAGTGGCC 135034650 Query 5265 AG-AGAG 5270 || |||| Sbjct 135034651 AGCAGAG 135034657 Score = 399 bits (442), Expect = 2e-107 Identities = 267/295 (91%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| || |||||||||| | ||||||| ||||||||| |||||||||||||||||| Sbjct 37588354 CAATGAACACTATGATGTGCAGCAGATGCCAAGGAAAGCAT-GGAGGTTTGAAATGGACC 37588412 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 37588413 GGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGGCTGCATCCTGCTGAGGAAG 37588472 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 |||| |||||||||||||||||| | || ||||| |||||||||||||||||||||| Sbjct 37588473 A-GACTCCTGGGCAGAGTCAAGCATGCTAGGTCTCAAGATCACCTACTTTGCGCTGATGG 37588531 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 ||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 37588532 ATGCAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAG 37588591 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||||||||||| ||||| |||||| |||||||||| ||| | | || ||||| Sbjct 37588592 ATACCCACAGAGTTCCTTACCACATCTCATTTGGTTCTCGGGTACNGGGCACCAG 37588646 >seq23 Length=89631738 Score = 398 bits (440), Expect = 6e-107 Identities = 265/295 (90%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| || |||||||||| | ||||||| |||||||||||||||||||||||| ||| Sbjct 68271626 CAATGAACACTATGATGTGCAGCAGATGCCAAGGAAAGCATAGGAGGTTTGAAATGAACC 68271685 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||| Sbjct 68271686 GGGAACCCAAGAGTGCCAGATACTGTGCTGAATGTAACAGGCTGTATCCTGCTGAGGAAG 68271745 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||| |||| ||||||||||| | | |||||||| |||| || |||||||||||||| Sbjct 68271746 GAAACTTCTGGGTAGAGTCAAGCAGGCTAGGCCTCAAGATCATCTTCTTTGCGCTGATGG 68271805 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 68271806 ATGGAAAGGTGTATGACATCACAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAG 68271865 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 |||||||| |||| ||||| |||||| |||||||||| ||| | ||||| ||||| Sbjct 68271866 ATACCCACGGAGTTCCTTACCACATCTCATTTGGTTCTCGGGTACCAGGCACCAG 68271920 >seq12 Length=92399829 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 48280232 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 48280173 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| |||||||||||||||||||||||| | |||||||| ||| Sbjct 48280172 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGCTAGGCCTCAAGATC 48280113 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 48280112 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 48280070 Score = 136 bits (150), Expect = 3e-28 Identities = 100/115 (87%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 48279984 CAGAGTGGGCTGGATGCCAGCGTGTGGGCATCTCCCCAGATACCCACAGAGTCCCTTACC 48279925 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTGA 5280 ||||| |||||||||| ||| | || || ||||| | || | ||||| | |||| Sbjct 48279924 ACATCTCATTTGGTTCTCGGGTACCGGGCACCAGTGGCC-GGCAGAGGTAGGTGA 48279871 >seq1 Length=172151128 Score = 205 bits (226), Expect = 7e-49 Identities = 210/271 (77%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 4971 ATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAAC 5030 |||| || ||||| | || || | | |||||| |||| || ||||| || |||| |||| Sbjct 60512934 ATACTATAATGTGTAGCCAATACAAAGGAAAGTATAGAAGATTTGAGATAGACCAGGAAA 60512875 Query 5031 CTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACT 5090 ||| ||| ||||||||||||||||||||| ||||||| ||||||||| ||||||| || Sbjct 60512874 CTAGGAGAGCCAGATACTGTGCTGAGTGTGATAGGCTCCATCCTGCTAAGGAAGGAGA-- 60512817 Query 5091 TTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAA 5150 |||||| ||| |||||| ||||| ||||| || |||| ||| ||||||||| | Sbjct 60512816 TTTGGGTAGATTCAAGCCTGTTGCTACTCAAGAT-TGCTACATTGTACTGATGGATAGTC 60512758 Query 5151 AGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCC 5210 || | ||||| ||||||||||| || |||| ||||| || ||||||| | ||||||| Sbjct 60512757 AGATCTATGACATCACAGAGTGAGCAGGATTCCAGCATGAAGGAATCT-CTTGGATACCC 60512699 Query 5211 ACAGAGTCCCTTATCACATCCCATTTGGTTC 5241 | |||| || ||| |||| || |||| || Sbjct 60512698 ATGGAGTTCCACATCCCATCTCACTTGGCTC 60512668 >seq13 Length=116904986 Score = 181 bits (200), Expect = 9e-42 Identities = 212/280 (76%), Gaps = 10/280 (4%) Strand=Plus/Minus Query 4994 CAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCT 5053 || ||||||| | |||||| ||||||| |||||| || ||||||||| || ||||||| Sbjct 92655082 CAAGGAAAGCTT-GGAGGTCTGAAATGCACCGGGCACTTAAGAGTGCTGGACTCTGTGCT 92655024 Query 5054 GAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTG 5113 || |||||| ||| | |||| ||||| ||| ||| | ||| || | || |||||| Sbjct 92655023 AAGCCTAATAGACTGTACCCTGATGAGGCAGGGAACTCTGGGGTAG--TAAACCATGTTA 92654966 Query 5114 GGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTGG 5173 ||| |||| |||||||||| || ||||||||||| | ||| ||||| || |||||||| Sbjct 92654965 GGCTTCAAGATCACCTACTGTGTACTGATGGATGGGAGGGTCTATGACAT--CAGAGTGG 92654908 Query 5174 GCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCCA 5233 | | ||||||||| || ||||||||| || ||| |||||| || || ||||| || Sbjct 92654907 GATAGATGCCAGC--ATGAGAATCTCCCAGGACACC--CAGAGTTCCATACTACATCACA 92654852 Query 5234 TTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 |||||| | || | | || ||||| | ||| |||||| Sbjct 92654851 TTTGGTCCTGGGTTACTGGGGACCAGAGGTCAGAAGAGAG 92654812 >seq14 Length=77350604 Score = 159 bits (176), Expect = 3e-35 Identities = 202/273 (74%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 4971 ATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAAC 5030 |||| |||| || | | ||||| |||||||| | || | || || || |||| ||||| Sbjct 32221211 ATACTATGAGGTATAGCTGATGCAAGGGAAAGTGTTGGCGATTCGAGATAGACCAGGAAC 32221270 Query 5031 CTAAG--AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGA 5088 |||| ||| || || || |||||||| | |||||| |||||| |||||||||| || Sbjct 32221271 CTAACTCAGTACCTGACTCTCTGCTGAGTACAGTAGGCTCCATCCTACTGAGGAAGGAGA 32221330 Query 5089 CTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGG 5148 || ||| || ||| ||||||||||||||| |||| |||||||| ||| | || Sbjct 32221331 CTCA--GGCTGACTCATGCATGTTGGGCCTCATGATCAGTTACTTTGCTCTGGTAGACAT 32221388 Query 5149 AAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATAC 5208 || | | || || ||||||||||||||| ||| | || |||| || ||||| | ||||| Sbjct 32221389 AATGAT-TACGACATCACAGAGTGGGCTAGATTCTAGTATGTGAGAGTCTCCTC-GATAC 32221446 Query 5209 CCACAGAGTCCCTTATCACATCCCATTTGGTTC 5241 | || |||| | |||||||| | |||||| Sbjct 32221447 CTACCGAGTTCTACATCACATCAGAGGTGGTTC 32221479 >seq28 Length=148379591 Score = 154 bits (170), Expect = 1e-33 Identities = 188/251 (75%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 4989 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACT 5048 ||||||| ||||||||||| ||| |||| | || | |||| || | ||| ||| | | Sbjct 109014886 GATGCCAAGGAAAGCATAGAAGGGTTGATACAAACAAGAAACC-AACA-TGCAAGACATT 109014943 Query 5049 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCA 5108 |||| |||| ||||||| | ||||| |||| | ||||||||||||| |||||| Sbjct 109014944 AAATGGAGTATAAT-GGCTGCAAGCCACTGAGAAAGGAGCCTTTTGGGCAGAGGCAAGCA 109015002 Query 5109 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 |||| | |||||| || |||||||||| |||||||| ||| || ||| |||| Sbjct 109015003 TGTTAG-CCTCAAGGTCCCCTACTTTGCACTGATGGAAAAAAAAGTTTATTGCATCAGGA 109015061 Query 5169 AGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACA 5228 | ||| |||||| || | |||||||||||| ||| || ||||||| |||||||||| Sbjct 109015062 AATGGTCTGGATTGCACTGCATGGGAATCTCCCTAGACACTGACAGAGTTCCTTATCACA 109015121 Query 5229 TCCCATTTGGT 5239 | |||||||| Sbjct 109015122 TTTCATTTGGT 109015132 >seq11 Length=111406228 Score = 109 bits (120), Expect = 4e-20 Identities = 127/166 (77%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 5019 TGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTG 5078 |||||| ||||| ||||||| | | ||| ||||| || || |||||| | ||||| Sbjct 105386574 TGGACCAAGAACC-AAGAGTGTG-GCTTCTGAGCTGAATGCAACAGGCTGTGTTCTGCTC 105386517 Query 5079 AGGAAGGTGACTTTTGGGCAGAGTC-AAGCATGTTGGGCCTCAAAATCACCTACTTTGCG 5137 ||||||| ||| | | ||||| | || |||| || |||||||||||| ||| | | Sbjct 105386516 AGGAAGGAGACCTG-GAGCAGAACCTAAACATGCTGAACCTCAAAATCACTCCCTTGGGG 105386458 Query 5138 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCC 5183 | | ||||||||||||| |||||| ||| ||||| ||||||||||| Sbjct 105386457 CAGGTGGATGGAAAGGTCTATGATGTCATAGAGTAGGCTGGATGCC 105386412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40210032417544