Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20pahari_20[refseq_20GCF_5F900095145.1_202017-04-28] 2,581 sequences; 2,475,012,951 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq1234 123 1e-25 seq28 96.9 2e-17 seq10 89.7 3e-15 >seq1234 Length=31474 Score = 123 bits (136), Expect = 1e-25 Identities = 85/91 (93%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 6790 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCGTACGCTCGTGCTCCACCTCC 6731 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||||||||| |||| || || |||||||||| Sbjct 6730 CCGACGCGG-CGGG-CG-AG-ACGGGCCGGT 6704 >seq28 Length=148379591 Score = 96.9 bits (106), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||||| ||||||||||||| || | ||||||||||||||||| Sbjct 72958495 CTGCCCAGGCATAGTTCACCATATTTCGGGTCCTAAAGCGTATGCTCGTGCTCCACCTCC 72958436 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 | || |||| |||| || || ||||||| || Sbjct 72958435 CGGATGCGG-CGGG-CG-AG-ACGGGCCAGT 72958409 >seq10 Length=113323912 Score = 89.7 bits (98), Expect = 3e-15 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| ||| |||| |||||||||||| Sbjct 51110548 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCTAACACATATGCTCATGCTCCACCTCC 51110489 Query 897 CC 898 || Sbjct 51110488 CC 51110487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860723855338