Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq2 262 3e-66 seq6 183 2e-42 seq5 120 2e-23 seq20 95.1 1e-15 >seq2 Length=131945496 Score = 262 bits (290), Expect = 3e-66 Identities = 156/163 (96%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 130202359 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 130202418 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||| Sbjct 130202419 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCGAGCATGCTGGGCCTCAAGATC 130202478 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 || |||||||||||||||||||||||||||||||| ||||||| Sbjct 130202479 ACTTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 130202521 Score = 118 bits (130), Expect = 9e-23 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| | Sbjct 130202604 CAGAGTGGGCTGGATGCCAGCGTGTGGGTATCTCCCCAGATACTCACAGAGTTCCTTACC 130202663 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 130202664 ACATCTCATTTGGTTCTCGG 130202683 >seq6 Length=117542938 Score = 183 bits (202), Expect = 2e-42 Identities = 205/267 (77%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 4997 TGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCC 5056 || |||| | ||||| |||| ||| ||| ||| |||||| |||||||||||| Sbjct 110767538 TGTAGCCAACTCCAGG--AAGCTTAGCAGGCTTGGGGTGGACCAAGAACCTAAGAGTATG 110767481 Query 5057 AGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAG 5116 | | ||| ||||| || || |||||| | ||||| ||||||| ||||| | ||||| Sbjct 110767480 -GCTTCTGAGCTGAATGCAACAGGCTGTGTTCTGCTCAGGAAGGAGACTTG-GAGCAGAA 110767423 Query 5117 TCGAG-CATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGA 5175 | | |||| || |||||||||||| ||| | || |||||||| |||||| ||||| Sbjct 110767422 CCTAAACATGCTGAACCTCAAAATCACTCCCTTGGGGCAGATGGATGCAAAGGTCTATGA 110767363 Query 5176 TATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCC 5235 | ||| ||||| |||||||||||||| || ||||||||||| || |||| |||||| || Sbjct 110767362 TGTCATAGAGTAGGCTGGATGCCAGCATG-GGGAATCTCCCAAGTTACC--CAGAGTTCC 110767306 Query 5236 TTGTCACATCTCATTTGGTTCACGGAT 5262 || ||| | |||||||||||||| ||| Sbjct 110767305 TTATCAAACCTCATTTGGTTCACAGAT 110767279 >seq5 Length=117181667 Score = 120 bits (132), Expect = 2e-23 Identities = 186/259 (72%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 5000 AGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAG--AGTGCCA 5057 ||| ||||| ||| |||| |||| | || || || ||| ||||||||| ||| || Sbjct 98070157 AGCTGATGCAAGGAAAAGTGTAGGTGATTCGAGATAAACCAGGAACCTAACCCAGTACCT 98070216 Query 5058 GATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGT 5117 || || |||| ||| ||||||| |||||| |||||| | |||| || | | Sbjct 98070217 GA--CTCTGCTAAGTACTATAGGCTCCATCCTATTGAGGA--GAGACTCA--GGATGGCT 98070270 Query 5118 CGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATA 5177 | ||||||||||||||| |||| |||||||| ||| | || |||| | ||||| | Sbjct 98070271 CATGCATGTTGGGCCTCATGATCAGTTACTTTGCTCTGGTAGACATAAAGAT-TATGACA 98070329 Query 5178 TCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTT 5237 | |||||||| ||| || | || |||| || ||||| || ||||| ||||||| || Sbjct 98070330 TAACAGAGTGAGCTAAATTCTAGTATGTGAGATTCTCCTCA-ATACCTACAGAGTTCCAC 98070388 Query 5238 GTCACATCTCATTTGGTTC 5256 |||||||| | |||||| Sbjct 98070389 ATCACATCTGAGGTGGTTC 98070407 >seq20 Length=148322235 Score = 95.1 bits (104), Expect = 1e-15 Identities = 181/264 (69%), Gaps = 17/264 (6%) Strand=Plus/Plus Query 5004 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGA-GTGCCAGATAC 5062 ||||||| ||||||||||| ||| |||| | || | || |||| ||| ||||| Sbjct 108160943 GATGCCAAGGAAAGCATAGAAGGGTTGATACAAACAAGAAA---AAGACATGCAAGATAT 108160999 Query 5063 TGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGC 5122 | |||| |||| | ||||| | ||||| |||| | |||||| | | || | ||| Sbjct 108161000 TACATGGAGTATAAT-GACTGCAAGCCACTGAGAAAGGAGCCTTTTGAGTAAAGGCAAGC 108161058 Query 5123 ATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG-----------ATGGAAAGGTGT 5171 || || |||||||| || |||||||| |||| | | |||||| | Sbjct 108161059 ATATT-GGCCTCAAGGTCCTCTACTTTGTAATGATAGGGGAAAAAAAAAAAAAAAGGTTT 108161117 Query 5172 ATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAG 5231 || |||| | | ||| |||||| ||| |||||||||||| ||| || |||||| Sbjct 108161118 ATTGCATCAGAAAATGGTCTGGATTCCACTACATGGGAATCTCCCTAGACACTGACAGAG 108161177 Query 5232 TCCCTTGTCACATCTCATTTGGTT 5255 | |||| |||||| ||||||| || Sbjct 108161178 TTCCTTATCACATTTCATTTGATT 108161201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40115961001872