Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq2 259 4e-65 seq6 185 7e-43 seq5 140 3e-29 seq20 102 7e-18 >seq2 Length=131945496 Score = 259 bits (286), Expect = 4e-65 Identities = 155/163 (95%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 130202359 AGGAGGTTTGAAATGGACCGGGAACCCAAGAGTGCCAGATACTGTGCTGAGTGTAACAGG 130202418 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 |||||||||||||||||||| ||||||||||||||||| |||||| |||||||||| ||| Sbjct 130202419 CTGCATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCGAGCATGCTGGGCCTCAAGATC 130202478 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 || |||||||||||||||||||||||||||||||| ||||||| Sbjct 130202479 ACTTACTTTGCGCTGATGGATGGAAAGGTGTATGACATCACAG 130202521 Score = 127 bits (140), Expect = 2e-25 Identities = 98/115 (85%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| | Sbjct 130202604 CAGAGTGGGCTGGATGCCAGCGTGTGGGTATCTCCCCAGATACTCACAGAGTTCCTTACC 130202663 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACCAGAGAGAGGAATGTGA 5280 ||||| |||||||||| ||| | || || ||||| | || | ||||| | |||| Sbjct 130202664 ACATCTCATTTGGTTCTCGGGTACCGGGCACCAGTGGCC-GGCAGAGGTAGGTGA 130202717 >seq6 Length=117542938 Score = 185 bits (204), Expect = 7e-43 Identities = 199/256 (78%), Gaps = 8/256 (3%) Strand=Plus/Minus Query 4993 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5052 ||||| |||| ||| ||| ||| |||||| |||||||||||| | | ||| || Sbjct 110767527 CCAGG--AAGCTTAGCAGGCTTGGGGTGGACCAAGAACCTAAGAGTATG-GCTTCTGAGC 110767471 Query 5053 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTC-AAGCATGT 5111 ||| || || |||||| | ||||| ||||||| ||||| | ||||| | || |||| Sbjct 110767470 TGAATGCAACAGGCTGTGTTCTGCTCAGGAAGGAGACTTG-GAGCAGAACCTAAACATGC 110767412 Query 5112 TGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGT 5171 || |||||||||||| ||| | || |||||||| |||||| |||||| ||| ||||| Sbjct 110767411 TGAACCTCAAAATCACTCCCTTGGGGCAGATGGATGCAAAGGTCTATGATGTCATAGAGT 110767352 Query 5172 GGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCC 5231 |||||||||||||| || ||||||||||| || |||| |||||| |||||||| | | Sbjct 110767351 AGGCTGGATGCCAGCATG-GGGAATCTCCCAAGTTACC--CAGAGTTCCTTATCAAACCT 110767295 Query 5232 CATTTGGTTCACGGAT 5247 |||||||||||| ||| Sbjct 110767294 CATTTGGTTCACAGAT 110767279 >seq5 Length=117181667 Score = 140 bits (154), Expect = 3e-29 Identities = 213/297 (72%), Gaps = 10/297 (3%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||| | |||| || | || | | ||||| ||| |||| |||| | || || || ||| Sbjct 98070137 CAACGGATACTATAAGGTATAGCTGATGCAAGGAAAAGTGTAGGTGATTCGAGATAAACC 98070196 Query 5025 GGGAACCTAAG--AGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGA 5082 ||||||||| ||| || || || |||| ||| ||||||| |||||| |||||| Sbjct 98070197 AGGAACCTAACCCAGTACCTGA--CTCTGCTAAGTACTATAGGCTCCATCCTATTGAGGA 98070254 Query 5083 AGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGAT 5142 | |||| || | ||| ||||||||||||||| |||| |||||||| ||| | Sbjct 98070255 --GAGACTCA--GGATGGCTCATGCATGTTGGGCCTCATGATCAGTTACTTTGCTCTGGT 98070310 Query 5143 GGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCC 5202 || |||| | ||||| || |||||||| ||| || | || |||| || ||||| | Sbjct 98070311 AGACATAAAGAT-TATGACATAACAGAGTGAGCTAAATTCTAGTATGTGAGATTCTCCTC 98070369 Query 5203 AGATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 | ||||| ||||||| || |||||||| | |||||| || | ||||||||||| Sbjct 98070370 A-ATACCTACAGAGTTCCACATCACATCTGAGGTGGTTCTTGGGTACCAGGTACCAG 98070425 >seq20 Length=148322235 Score = 102 bits (112), Expect = 7e-18 Identities = 189/275 (69%), Gaps = 17/275 (6%) Strand=Plus/Plus Query 4978 GATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGA- 5036 ||||| || ||||||| ||||||||||| ||| |||| | || | || |||| Sbjct 108160932 GATGTTGAATTGATGCCAAGGAAAGCATAGAAGGGTTGATACAAACAAGAAA---AAGAC 108160988 Query 5037 GTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGG 5096 ||| ||||| | |||| |||| | ||||| | ||||| |||| | |||||| | Sbjct 108160989 ATGCAAGATATTACATGGAGTATAAT-GACTGCAAGCCACTGAGAAAGGAGCCTTTTGAG 108161047 Query 5097 CAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG-----------A 5145 | || ||||||| || |||||||| || |||||||| |||| | | Sbjct 108161048 TAAAGGCAAGCATATT-GGCCTCAAGGTCCTCTACTTTGTAATGATAGGGGAAAAAAAAA 108161106 Query 5146 TGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGA 5205 |||||| ||| |||| | | ||| |||||| ||| |||||||||||| ||| Sbjct 108161107 AAAAAAGGTTTATTGCATCAGAAAATGGTCTGGATTCCACTACATGGGAATCTCCCTAGA 108161166 Query 5206 TACCCACAGAGTCCCTTATCACATCCCATTTGGTT 5240 || ||||||| ||||||||||| |||||| || Sbjct 108161167 CACTGACAGAGTTCCTTATCACATTTCATTTGATT 108161201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40208755360096