Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mus_20spretus_20[genbank_20GCA_5F001624865.1_202016-04-26] 5,404 sequences; 2,625,587,472 total letters Query= NC_018464.1 Length=927 Score E Sequences producing significant alignments: (Bits) Value seq4 105 4e-20 seq13 102 5e-19 seq17 86.0 4e-14 seq1 78.8 5e-12 seq19 75.2 6e-11 >seq4 Length=114123490 Score = 105 bits (116), Expect = 4e-20 Identities = 81/91 (89%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 93653455 CTGCCCAGGCATAGTTCGTCATCTTTCGGGTCCTAACGCATACGCTCGTGCTCCACCTCC 93653396 Query 897 CCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 ||| | || |||| || || |||||||||| Sbjct 93653395 CCGGTGAGG-CGGG-CG-AG-ACGGGCCGGT 93653369 >seq13 Length=160222558 Score = 102 bits (112), Expect = 5e-19 Identities = 83/95 (87%), Gaps = 8/95 (8%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCAT----GCGCTCGTGCTCCAC 892 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 34484177 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAAAGCATAAGCTCGCTCGTGCTCCAC 34484118 Query 893 CTCCCCGACGCGGTCGGGTCGTAGTACGGGCCGGT 927 || |||| ||||| |||| || || |||||||||| Sbjct 34484117 CTTCCCGGCGCGG-CGGG-CG-AG-ACGGGCCGGT 34484087 >seq17 Length=136257712 Score = 86.0 bits (94), Expect = 4e-14 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||||||| | | |||||||||||||||| Sbjct 5193159 CTGCCCAGGCATAGTTCACCATCTTTCTGGTCCTAACTCCTATGCTCGTGCTCCACCTCA 5193100 Query 897 CCGACGC 903 | | ||| Sbjct 5193099 CTGGCGC 5193093 >seq1 Length=198846266 Score = 78.8 bits (86), Expect = 5e-12 Identities = 55/63 (87%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 |||||||||||||||||||| |||||| ||||| || |||| | ||| |||||||||| | Sbjct 151823909 CTGCCCAGGCATAGTTCACCTTCTTTCAGGTCCCAATGCATTCACTCATGCTCCACCTAC 151823850 Query 897 CCG 899 ||| Sbjct 151823849 CCG 151823847 Score = 75.2 bits (82), Expect = 6e-11 Identities = 55/63 (87%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||| || | | ||||| |||||||| ||| Sbjct 151842550 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCCAA-GACTTCGCTCCTGCTCCACATCC 151842608 Query 897 CCG 899 ||| Sbjct 151842609 CCG 151842611 Score = 75.2 bits (82), Expect = 6e-11 Identities = 55/63 (87%), Gaps = 1/63 (2%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 ||||||||||||||||||||||||||| ||||| || | | ||||| |||||||| ||| Sbjct 151848182 CTGCCCAGGCATAGTTCACCATCTTTCAGGTCCCAA-GACTTCGCTCCTGCTCCACATCC 151848240 Query 897 CCG 899 ||| Sbjct 151848241 CCG 151848243 >seq19 Length=126249303 Score = 75.2 bits (82), Expect = 6e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 837 CTGCCCAGGCATAGTTCACCATCTTTCGGGTCCTAACGCATGCGCTCGTGCTCCACCTCC 896 || || ||| ||| ||||||||||||| |||||||| ||||| ||| ||||||||||||| Sbjct 236623 CTTCCTAGGAATACTTCACCATCTTTCAGGTCCTAATGCATGTGCTTGTGCTCCACCTCC 236682 Query 897 C 897 | Sbjct 236683 C 236683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2860640571192