Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq10559 145 6e-31 seq327 132 4e-27 seq13497 127 2e-25 >seq10559 Length=340629 Score = 145 bits (160), Expect = 6e-31 Identities = 158/205 (77%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 5058 GATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGT 5117 ||| |||||||||| | | ||||||||| ||||| |||||| ||| | ||||||| Sbjct 251720 GATGCTGTGCTGAGCGCAC-AGGCTGCATTCTGCTCGGGAAGGAGACCTG-GGGCAGAAC 251663 Query 5118 CGA-GCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGAT 5176 | | |||||| | ||||| | ||||| ||||| || |||| | |||||||| | ||| Sbjct 251662 CAAAGCATGTGGAGCCTCGAGATCACGTACTTGGCATGGATGAAGGGAAAGGTCTGTGAC 251603 Query 5177 ATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCT 5236 || | ||||||||||| ||||||| ||||||||||| || || |||| |||||| || Sbjct 251602 ATAATGGAGTGGGCTGGGTGCCAGCATGTGGGAATCTGCCGAGTTACC--CAGAGTTCCC 251545 Query 5237 TGTCACATCTCATTTGGTTCACGGA 5261 ||||| |||| | |||||||||| Sbjct 251544 GATCACACCTCACTGGGTTCACGGA 251520 >seq327 Length=887473 Score = 132 bits (146), Expect = 4e-27 Identities = 181/249 (73%), Gaps = 19/249 (8%) Strand=Plus/Plus Query 5008 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5067 ||||||| || | ||||||||| ||| ||| | ||| | |||||| || |||| Sbjct 439705 CCAGGGAT-GCTTCAGAGGTTTGAGATGCACCAGACACCCAGGAGTGCTGGACACTGCCA 439763 Query 5068 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTT 5127 |||| ||||| ||||| ||||||||||||| |||||| | | || | |||||||| Sbjct 439764 GGAGT--AATAGCCTGCACCCTGCTGAGGAAGACGACTTTGGAGTAG--TAAAGCATGTT 439819 Query 5128 GGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTG 5187 ||||||||| |||| ||||||| |||||| |||||||||| | ||| || |||| | Sbjct 439820 GGGCCTCAAGTTCACTTACTTTGTACTGATGAATGGAAAGGTCTGTGACAT--TAGAGAG 439877 Query 5188 GGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACATCTC 5247 || ||||||||| | ||||||||| |||||| || | |||||| | Sbjct 439878 GGACAGATGCCAGC--AGGAGAATCTCCC----------CAGAGTTCCATATCACATGAC 439925 Query 5248 ATTTGGTTC 5256 ||||||||| Sbjct 439926 ATTTGGTTC 439934 >seq13497 Length=109588 Score = 127 bits (140), Expect = 2e-25 Identities = 79/85 (93%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5099 GGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATG 5158 || ||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||| Sbjct 37828 GGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATCACCTACTTTGCACTGATG 37887 Query 5159 GATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| ||||||||||||| Sbjct 37888 GATGGAAAGGTCTATGATATCACAG 37912 Score = 122 bits (134), Expect = 7e-24 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| | Sbjct 38002 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTTACC 38061 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 38062 ACATCTCATTTGGTTCTCGG 38081 Score = 118 bits (130), Expect = 8e-23 Identities = 68/70 (97%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 37577 AGGAGGTTTGAAATGGATCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 37636 Query 5081 CTGCATCCTG 5090 |||||||||| Sbjct 37637 CTGCATCCTG 37646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 39952651933656