Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_001608.3 Length=19111 Score E Sequences producing significant alignments: (Bits) Value seq1523 87.8 2e-13 >seq1523 Length=406015 Score = 87.8 bits (96), Expect = 2e-13 Identities = 324/507 (64%), Gaps = 33/507 (7%) Strand=Plus/Minus Query 619 TTGGCTTACCACAGGCCACATGAAAGTAATTTTCGGGATTTTGAGGTCCAG------CTT 672 ||||| ||| | |||| |||| | ||||||||||| |||| | | ||| Sbjct 192874 TTGGCATACTTCTGGCCTTATGATGATTATTTTCGGGATCATGAGAGCAATGCAAGCCTT 192815 Query 673 CATTTTAAAGTTTGTGTTG---ATTCATCAAGGAGTAAATTTGGTGACAGGTCATGATGC 729 | || |||||| ||||| ||||| || || | ||||| || |||| |||||||| Sbjct 192814 TACCTTCAAGTTTATGTTGTTAATTCACCACGGGATTAATTTAGTTGCAGGGCATGATGC 192755 Query 730 CTATGACAGTATCATTAGTAATTCAGTAGGTCAAACTAGATTCTCAGGACTTCTTATCGT 789 |||| | |||||||| |||| | | ||| | || || || | || || Sbjct 192754 TGATGATATTATCATTACCAATTTGATGGCTCAGGCCCTGTTTTCCAAGCTCTTAATTGT 192695 Query 790 GAAAACAGTTCTCGAGTTCATCTTGCAAAAAACTGATTCAGGGG------TGACACTACA 843 ||||| ||| | || | ||||| || || ||||| | || || || Sbjct 192694 CAAAACTGTTTTAGATCGTGTATTGCACAAG---GA---AGGGGACCAAATCACGCTCCA 192641 Query 844 TCCTTTGGTGCGGACCTCCAAAGTAAAAAATGAAGTTGCTAGTTTCAAGCAGGCGTTGAG 903 || ||||| | ||| || || | || || || | ||| || || | || ||| Sbjct 192640 TCGATTGGTCCAGACAATTAAGGTTAGAACAGAGGTGGATAGCTTTAAACTAGCACTGAA 192581 Query 904 CAACCTAGCCCGACATGGGGAATACGCACCATTTGCACGGGTTCTGAATTTATCAGGGAT 963 | |||| || || | ||| | || || |||| ||| | || ||| ||| ||| | Sbjct 192580 GGGCTTAGCACGCCACCGAGAAGATGCTCCTTTTGTACGAATACTTAATCGATCTGGGGT 192521 Query 964 TAACAACCTCGAACATGGACTCTATCCTCAGCTTTCAGCAATTGCGCTGGGTGTGGCAAC 1023 |||||| || || ||||| | | |||||||| ||||| ||||| || || ||||| Sbjct 192520 TAACAATCTGGAGCATGGGATATCCCCTCAGCTATCAGCCATTGCCTCAGGAGTTGCAAC 192461 Query 1024 AGC--------ACACGGCAGTACA----TTGGCTGGTGTCAATGTTGGCGAACAATATCA 1071 ||| |||| || | | || |||||||| | || || ||||||||||| Sbjct 192460 AGCCCGTGGAGACACCTTAGGAGACAGCTTAGCTGGTGTAACAGTAGGAGAACAATATCA 192401 Query 1072 ACAACTACGAGAGGCGGCACATGATGC 1098 ||||||| |||||| ||| ||| || Sbjct 192400 GCAACTACAAGAGGCCGCAAGTGAGGC 192374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60777623365404