Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq327 156 3e-34 seq10559 152 4e-33 seq13497 134 1e-27 >seq327 Length=887473 Score = 156 bits (172), Expect = 3e-34 Identities = 206/281 (73%), Gaps = 20/281 (7%) Strand=Plus/Plus Query 4993 CCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGC 5052 ||||||| || | ||||||||| ||| ||| | ||| | |||||| || |||| Sbjct 439705 CCAGGGAT-GCTTCAGAGGTTTGAGATGCACCAGACACCCAGGAGTGCTGGACACTGCCA 439763 Query 5053 TGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTT 5112 |||| ||||| ||||| ||||||||||||| |||||| | | || | ||||||||| Sbjct 439764 GGAGT--AATAGCCTGCACCCTGCTGAGGAAGACGACTTTGGAGTAG--TAAAGCATGTT 439819 Query 5113 GGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAGAGTG 5172 ||||||||| |||| ||||||| |||||| |||||||||| | ||| || |||| | Sbjct 439820 GGGCCTCAAGTTCACTTACTTTGTACTGATGAATGGAAAGGTCTGTGACAT--TAGAGAG 439877 Query 5173 GGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATCACATCCC 5232 || ||||||||| | ||||||||| |||||| || |||||||| | Sbjct 439878 GGACAGATGCCAGC--AGGAGAATCTCCC----------CAGAGTTCCATATCACATGAC 439925 Query 5233 ATTTGGTTCACGGATGCCAGGTACCAGCGACCAG-AGAGAG 5272 ||||||||| | | ||||||||||| | ||| |||||| Sbjct 439926 ATTTGGTTCTGTGTTACCAGGTACCAGTGGTCAGAAGAGAG 439966 >seq10559 Length=340629 Score = 152 bits (168), Expect = 4e-33 Identities = 168/219 (77%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 5043 GATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGT 5102 ||| |||||||||| | | ||||||||| ||||| |||||| ||| | ||||||| Sbjct 251720 GATGCTGTGCTGAGCGCAC-AGGCTGCATTCTGCTCGGGAAGGAGACCTG-GGGCAGAAC 251663 Query 5103 CAA-GCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGAT 5161 ||| |||||| | ||||| | ||||| ||||| || |||| | |||||||| | ||| Sbjct 251662 CAAAGCATGTGGAGCCTCGAGATCACGTACTTGGCATGGATGAAGGGAAAGGTCTGTGAC 251603 Query 5162 ATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCT 5221 || | ||||||||||| ||||||| ||||||||||| || || |||| |||||| || Sbjct 251602 ATAATGGAGTGGGCTGGGTGCCAGCATGTGGGAATCTGCCGAGTTACC--CAGAGTTCCC 251545 Query 5222 TATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGC 5260 |||||| | || | |||||||||| | ||| | |||| Sbjct 251544 GATCACACCTCACTGGGTTCACGGACACTAGGCATCAGC 251506 >seq13497 Length=109588 Score = 134 bits (148), Expect = 1e-27 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| | Sbjct 38002 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCTCCAGATACCCACAGAGTTCCTTACC 38061 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| | ||||| ||||| Sbjct 38062 ACATCTCATTTGGTTCTCGGGTACCAGGCACCAG 38095 Score = 131 bits (144), Expect = 1e-26 Identities = 80/85 (94%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 5084 GGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATG 5143 || |||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| Sbjct 37828 GGAGACTTTTGGGCAGAGTCAAGCATGCTGGGCCTCAAGATCACCTACTTTGCACTGATG 37887 Query 5144 GATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| ||||||||||||| Sbjct 37888 GATGGAAAGGTCTATGATATCACAG 37912 Score = 118 bits (130), Expect = 8e-23 Identities = 68/70 (97%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 37577 AGGAGGTTTGAAATGGATCGGGAACCTAAGAATGCCAGATACTGTGCTGAGTGTAATAGG 37636 Query 5066 CTGCATCCTG 5075 |||||||||| Sbjct 37637 CTGCATCCTG 37646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40045068533008