Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Myodes_20glareolus_20[genbank_20GCA_5F001305785.1_202015-10-02] 367,242 sequences; 3,443,072,068 total letters Query= NC_014373.1 Length=18940 Score E Sequences producing significant alignments: (Bits) Value seq1523 105 8e-19 >seq1523 Length=406015 Score = 105 bits (116), Expect = 8e-19 Identities = 281/424 (66%), Gaps = 18/424 (4%) Strand=Plus/Minus Query 1098 TAATACATCAAGGAATGCATATGGTTGCAGGGCATGATGCTAATGATGCCGTCATTGCCA 1157 |||| || || || || || | |||||||||||||||||| ||||| ||||| ||| Sbjct 192794 TAATTCACCACGGGATTAATTTAGTTGCAGGGCATGATGCTGATGATATTATCATTACCA 192735 Query 1158 ACTCTGTAGCTCAAGCTCGTTTCTCCGGATTGTTGATAGTCAAAACAGTGCTTGATCATA 1217 | | | ||||| || | || ||| | || || |||||||| || | |||| | Sbjct 192734 ATTTGATGGCTCAGGCCCTGTTTTCCAAGCTCTTAATTGTCAAAACTGTTTTAGATCGTG 192675 Query 1218 TCCTCCAAAAAACAGAGCACGGAGTTCGCCTGCATCCCTTGGCGCGAACAGCCAAAGTCA 1277 | | || || || | || | | || |||| |||| | ||| || || | Sbjct 192674 TATTGCACAAGGAAGGGGACCAAATCACGCTCCATCGATTGGTCCAGACAATTAAGGTTA 192615 Query 1278 AAAATGAGGTG-AGCTCTTTTAAGGC-CGCTTTAGC-CTCACTAGCACAACATGGAGAAT 1334 || |||||| | |||| || | || || || |||||| || ||||| Sbjct 192614 GAACAGAGGTGGATAGCTTTAAACTAGCACTGAAGGGCT---TAGCACGCCACCGAGAAG 192558 Query 1335 ATGCCCCGTTTGCTCGTCTGCTGAATCTATCTGGGGTTAATAATCTTGAGCATGGGCTTT 1394 |||| || |||| || | || |||| |||||||||||| ||||| ||||||||| | | Sbjct 192557 ATGCTCCTTTTGTACGAATACTTAATCGATCTGGGGTTAACAATCTGGAGCATGGGATAT 192498 Query 1395 TCCCTCAACTTTCTGCAATTGCTTTGGGAGTAGCAACTGC--------ACA---TGGGAG 1443 |||||| || || || ||||| | ||||| ||||| || ||| | |||| Sbjct 192497 CCCCTCAGCTATCAGCCATTGCCTCAGGAGTTGCAACAGCCCGTGGAGACACCTTAGGAG 192438 Query 1444 -CACTCTGGCTGGAGTCAATGTAGGAGAGCAATACCAACAACTGCGAGAAGCAGCCACTG 1502 || | ||||| || | |||||||| ||||| || ||||| | ||| || || | || Sbjct 192437 ACAGCTTAGCTGGTGTAACAGTAGGAGAACAATATCAGCAACTACAAGAGGCCGCAAGTG 192378 Query 1503 AGGC 1506 |||| Sbjct 192377 AGGC 192374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60232746905538