Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_001461.1 Length=12573 Score E Sequences producing significant alignments: (Bits) Value seq25827 374 7e-100 seq12177 363 1e-96 seq10027 300 1e-77 seq5015 260 1e-65 seq16106 250 2e-62 seq24701 170 2e-38 seq24645 93.3 3e-15 >seq25827 Length=4145727 Score = 374 bits (414), Expect = 7e-100 Identities = 243/267 (91%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| |||||||| | |||||||||||||| |||||||||||| ||||||||||||| Sbjct 331294 ATGTGTGGCCGATGCTAAGGAAAGCATAGGAGACTTGAAATGGACCAGGAACCTAAGAGT 331235 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| Sbjct 331234 GCCAGATACTGTGCTGAGTGTAATAGGCTACATCCTGCTGAGGAAGGAGACTTCTGGGCA 331175 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||| ||| Sbjct 331174 GAGTCAAGCATGTTAGGCCTCAGAATCACCTACTTTGCTCTGATGGATGGAAAGGTCTAT 331115 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || ||||||||||||||||||||||| |||||||| |||||||||| ||||||||||| Sbjct 331114 GACATCACAGAGTGGGCTGGATGCCAATGTGTGGGACTCTCCCCAGACACCCACAGAGTT 331055 Query 5234 CCTTGTCACATCTCATTTGGTTCACGG 5260 |||| ||||||||| |||||||| ||| Sbjct 331054 CCTTATCACATCTCTTTTGGTTCTCGG 331028 >seq12177 Length=6425268 Score = 363 bits (402), Expect = 1e-96 Identities = 239/263 (91%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| ||||||| |||||||| ||||| |||||||||||||||||||||||| || Sbjct 4724892 ATGTGTAGCTGATGCCAAGGAAAGCACAGGAGATTTGAAATGGACCGGGAACCTAAGTGT 4724951 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 ||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| Sbjct 4724952 GCCAGATACTGTGCTGA-----ATAGGCTACATCCTGCTGAGGAAGGAGACTTTTGGGCA 4725006 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||| Sbjct 4725007 GAGTCAAGCATGTTGGGCCTCCAAATCACCTACTTTGCTCTGATGGATGGAAAGGTCTAT 4725066 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || |||| ||||||||||||||||||| |||||||||||| |||||| ||||||||||| Sbjct 4725067 GACATCAGAGAGTGGGCTGGATGCCAGTGTGTGGGAATCT-CCCAGACACCCACAGAGTT 4725125 Query 5234 CCTTGTCACATCTCATTTGGTTC 5256 |||| |||||||||||||||||| Sbjct 4725126 CCTTATCACATCTCATTTGGTTC 4725148 >seq10027 Length=2255031 Score = 300 bits (332), Expect = 1e-77 Identities = 226/266 (85%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 4995 TGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTG 5054 ||||||| ||||||| |||||| ||||||| |||||||||||||||||| |||||| || Sbjct 1336171 TGTGCAGTTGATGCCAAGGAAAGTATAGGAGATTTGAAATGGACCGGGAATCTAAGACTG 1336230 Query 5055 CCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAG 5114 |||||| |||| ||||||| ||||||| ||| ||||||| ||||| |||||| |||||| Sbjct 1336231 CCAGATTCTGTACTGAGTGCAATAGGCCACATTCTGCTGAAGAAGGAGACTTTGGGGCAG 1336290 Query 5115 AGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATG 5174 |||| ||||| ||||| ||||| | ||||||||||| |||||||||| ||||| |||| Sbjct 1336291 AGTCAAGCATCTTGGGTCTCAAGAAGACCTACTTTGCATTGATGGATGGCAAGGTCTATG 1336350 Query 5175 ATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCC 5234 | ||||||||||||||||||||| | | | | ||||||||||| |||||||||||| | Sbjct 1336351 ACGTCACAGAGTGGGCTGGATGCCGGTTTATAGTAATCTCCCCAGCTACCCACAGAGTTC 1336410 Query 5235 CTTGTCACATCTCATTTGGTTCACGG 5260 | | |||||| ||||||||||| ||| Sbjct 1336411 CCTATCACATTTCATTTGGTTCTCGG 1336436 >seq5015 Length=2278188 Score = 260 bits (288), Expect = 1e-65 Identities = 215/258 (83%), Gaps = 7/258 (3%) Strand=Plus/Plus Query 4994 ATGTGCAGCCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGT 5053 ||||| ||| ||||||| |||| || | ||||||||||||||| | ||||||||||||| Sbjct 139590 ATGTGTAGCTGATGCCAAGGAACACAAAAGAGGTTTGAAATGGATCAGGAACCTAAGAGT 139649 Query 5054 GCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCA 5113 |||||||| ||| ||| |||| |||||||||||||||||||||||| ||| || ||||| Sbjct 139650 GCCAGATATTGTACTGTGTGT--TAGGCTGCATCCTGCTGAGGAAGGAGAC-TTGGGGCA 139706 Query 5114 GAGTCGAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTAT 5173 ||||| |||||||||| |||||| ||||| ||||| || |||||| |||||||||| ||| Sbjct 139707 GAGTCAAGCATGTTGGACCTCAAGATCACATACTTGGCACTGATGAATGGAAAGGTCTAT 139766 Query 5174 GATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTC 5233 || |||| |||||| |||| |||||| ||| |||||||||| || ||| |||||| Sbjct 139767 GACATCATGGAGTGGACTGGGTGCCAGTGTGGAGGAATCTCCC---AT-CCCCCAGAGTT 139822 Query 5234 CCTTGTCACATCTCATTT 5251 || | ||| | ||||||| Sbjct 139823 CCCTATCATACCTCATTT 139840 >seq16106 Length=371454 Score = 250 bits (276), Expect = 2e-62 Identities = 153/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5021 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5080 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125670 AGGAGATTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 125729 Query 5081 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCATGTTGGGCCTCAAAATC 5140 || ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| Sbjct 125730 CTACATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 125789 Query 5141 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 ||||||||||| || ||||||||||| || ||||| ||||||| Sbjct 125790 ACCTACTTTGCACTAATGGATGGAAAAGTCTATGACATCACAG 125832 Score = 127 bits (140), Expect = 2e-25 Identities = 76/80 (95%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 5181 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTC 5240 |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| || Sbjct 125923 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGACACCCACAGAGTTCCTTATC 125982 Query 5241 ACATCTCATTTGGTTCACGG 5260 |||||||||||||||| ||| Sbjct 125983 ACATCTCATTTGGTTCTCGG 126002 >seq24701 Length=156879 Score = 170 bits (188), Expect = 2e-38 Identities = 191/253 (75%), Gaps = 13/253 (5%) Strand=Plus/Minus Query 5004 GATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACT 5063 ||||||| |||| ||| || ||||||||||||| | || || |||||| ||||| Sbjct 63567 GATGCCAAGGAACTTCTAGAAGATTTGAAATGGACCAAGCACTTACGAGTGCTGAATACT 63508 Query 5064 GTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCGAGCA 5123 || | ||| |||||||| |||| |||||| || ||||||| ||| | || Sbjct 63507 GTCCAAAGT----AAGGCTGCACCCTGTTGAGGAGGGACACTTTTG------GTCAATCA 63458 Query 5124 TGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5183 |||||||||||| ||| ||| |||||| |||| |||||||||| ||||| ||||||| Sbjct 63457 TGTTGGGCCTCAGGATCGCCT-CTTTGCACTGACAAATGGAAAGGTCTATGACATCACAG 63399 Query 5184 AGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTGTCACA 5243 ||| || | ||||||||| |||| ||||| ||| ||| ||| |||||| | || ||||| Sbjct 63398 AGTAGGATAGATGCCAGCATGTGAGAATCCCCCAAGAAACC--CAGAGTTCTTTATCACA 63341 Query 5244 TCTCATTTGGTTC 5256 || |||| |||| Sbjct 63340 TCACATTCAGTTC 63328 >seq24645 Length=9034643 Score = 93.3 bits (102), Expect = 3e-15 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 5153 CTGATGGATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATC 5212 ||| ||| || || || |||||| | |||||||||| ||||||||| | || || || Sbjct 6524348 CTGTTGGTTGCCAAAGTCTATGATGTGACAGAGTGGGACAGATGCCAGCCTATGAGAGTC 6524289 Query 5213 TCCCCAGATACCCACAGAGTCCCTTGTCACATCTCATTTGGTTC 5256 |||| || ||| ||||||| |||||||| |||||||||||||| Sbjct 6524288 TCCCTAGGTACGCACAGAGAACCTTGTCAAATCTCATTTGGTTC 6524245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40048454371968