Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_003678.1 Length=12602 Score E Sequences producing significant alignments: (Bits) Value seq25827 394 7e-106 seq12177 383 1e-102 seq10027 316 2e-82 seq5015 268 7e-68 seq16106 253 2e-63 seq24701 201 9e-48 >seq25827 Length=4145727 Score = 394 bits (436), Expect = 7e-106 Identities = 256/281 (91%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| ||||||| | |||||||||||||| |||||||||||| Sbjct 331308 CAATGAATACTATGATGTGTGGCCGATGCTAAGGAAAGCATAGGAGACTTGAAATGGACC 331249 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 331248 AGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTACATCCTGCTGAGGAAG 331189 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||| |||||||||||||||||||| ||||||| ||||||||||||||| ||||||| Sbjct 331188 GAGACTTCTGGGCAGAGTCAAGCATGTTAGGCCTCAGAATCACCTACTTTGCTCTGATGG 331129 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||| Sbjct 331128 ATGGAAAGGTCTATGACATCACAGAGTGGGCTGGATGCCAATGTGTGGGACTCTCCCCAG 331069 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGG 5245 | ||||||||||| |||||||||||| | |||||||| ||| Sbjct 331068 ACACCCACAGAGTTCCTTATCACATCTCTTTTGGTTCTCGG 331028 >seq12177 Length=6425268 Score = 383 bits (424), Expect = 1e-102 Identities = 252/277 (91%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 |||||||||| |||||||| | | ||||||| |||||||| ||||| ||||||||||||| Sbjct 4724878 CAATGAATACTATGATGTGTAGCTGATGCCAAGGAAAGCACAGGAGATTTGAAATGGACC 4724937 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||| Sbjct 4724938 GGGAACCTAAGTGTGCCAGATACTGTGCTGA-----ATAGGCTACATCCTGCTGAGGAAG 4724992 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 4724993 GAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCCAAATCACCTACTTTGCTCTGATGG 4725052 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| ||||| |||| ||||||||||||||||||| |||||||||||| ||||| Sbjct 4725053 ATGGAAAGGTCTATGACATCAGAGAGTGGGCTGGATGCCAGTGTGTGGGAATCT-CCCAG 4725111 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTC 5241 | ||||||||||| |||||||||||| |||||||||| Sbjct 4725112 ACACCCACAGAGTTCCTTATCACATCTCATTTGGTTC 4725148 >seq10027 Length=2255031 Score = 316 bits (350), Expect = 2e-82 Identities = 243/288 (84%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||||| ||| |||||| ||||||| |||||| ||||||| ||||||||||||| Sbjct 1336156 CAATGAATATCATGCTGTGCAGTTGATGCCAAGGAAAGTATAGGAGATTTGAAATGGACC 1336215 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||| |||||| |||||||| |||| ||||||| ||||||| ||| ||||||| |||| Sbjct 1336216 GGGAATCTAAGACTGCCAGATTCTGTACTGAGTGCAATAGGCCACATTCTGCTGAAGAAG 1336275 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | |||||| |||||||||||||||| ||||| ||||| | ||||||||||| |||||| Sbjct 1336276 GAGACTTTGGGGCAGAGTCAAGCATCTTGGGTCTCAAGAAGACCTACTTTGCATTGATGG 1336335 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||| ||||| ||||| ||||||||||||||||||||| | | | | ||||||||||| Sbjct 1336336 ATGGCAAGGTCTATGACGTCACAGAGTGGGCTGGATGCCGGTTTATAGTAATCTCCCCAG 1336395 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAG 5252 |||||||||||| || |||||||| |||||||||| ||| | |||| Sbjct 1336396 CTACCCACAGAGTTCCCTATCACATTTCATTTGGTTCTCGGGTACCAG 1336443 >seq5015 Length=2278188 Score = 268 bits (296), Expect = 7e-68 Identities = 225/272 (83%), Gaps = 7/272 (3%) Strand=Plus/Plus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 ||||||| | ||||||| | | ||||||| |||| || | ||||||||||||||| | Sbjct 139576 CAATGAACATTGTGATGTGTAGCTGATGCCAAGGAACACAAAAGAGGTTTGAAATGGATC 139635 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 ||||||||||||||||||||| ||| ||| |||| ||||||||||||||||||||||| Sbjct 139636 AGGAACCTAAGAGTGCCAGATATTGTACTGTGTGT--TAGGCTGCATCCTGCTGAGGAAG 139693 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||| ||||||||||||||||||||| |||||| ||||| ||||| || |||||| Sbjct 139694 GAGACTTG-GGGCAGAGTCAAGCATGTTGGACCTCAAGATCACATACTTGGCACTGATGA 139752 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| ||||| |||| |||||| |||| |||||| ||| |||||||||| Sbjct 139753 ATGGAAAGGTCTATGACATCATGGAGTGGACTGGGTGCCAGTGTGGAGGAATCTCCC--- 139809 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTT 5236 || ||| |||||| || ||||| | | ||||| Sbjct 139810 AT-CCCCCAGAGTTCCCTATCATACCTCATTT 139840 >seq16106 Length=371454 Score = 253 bits (280), Expect = 2e-63 Identities = 154/163 (94%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 5006 AGGAGGTTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGG 5065 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 125670 AGGAGATTTGAAATGGACCGGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGA 125729 Query 5066 CTGCATCCTGCTGAGGAAGGTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 5125 || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 125730 CTACATCCTGCTGAGGAAGGAGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATC 125789 Query 5126 ACCTACTTTGCGCTGATGGATGGAAAGGTGTATGATATCACAG 5168 ||||||||||| || ||||||||||| || ||||| ||||||| Sbjct 125790 ACCTACTTTGCACTAATGGATGGAAAAGTCTATGACATCACAG 125832 Score = 129 bits (142), Expect = 5e-26 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 5166 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGATACCCACAGAGTCCCTTATC 5225 |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 125923 CAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAGACACCCACAGAGTTCCTTATC 125982 Query 5226 ACATCCCATTTGGTTCACGGATGCCAGGTACCAG 5259 ||||| |||||||||| ||| | || || |||| Sbjct 125983 ACATCTCATTTGGTTCTCGGGTACCCGGCCCCAG 126016 >seq24701 Length=156879 Score = 201 bits (222), Expect = 9e-48 Identities = 232/309 (75%), Gaps = 14/309 (5%) Strand=Plus/Minus Query 4965 CAATGAATACGATGATGTGCAACCGATGCCAGGGAAAGCATAGGAGGTTTGAAATGGACC 5024 || || |||| |||||| ||| ||||||| |||| ||| || ||||||||||||| Sbjct 63591 CAGTGCATACTATGATGCCTAACTGATGCCAAGGAACTTCTAGAAGATTTGAAATGGACC 63532 Query 5025 GGGAACCTAAGAGTGCCAGATACTGTGCTGAGTGTAATAGGCTGCATCCTGCTGAGGAAG 5084 | || || |||||| ||||||| | ||| |||||||| |||| |||||| | Sbjct 63531 AAGCACTTACGAGTGCTGAATACTGTCCAAAGT----AAGGCTGCACCCTGTTGAGGAGG 63476 Query 5085 GTGACTTTTGGGCAGAGTCAAGCATGTTGGGCCTCAAAATCACCTACTTTGCGCTGATGG 5144 | ||||||| ||||| |||||||||||||| ||| ||| |||||| |||| Sbjct 63475 GACACTTTTG------GTCAATCATGTTGGGCCTCAGGATCGCCT-CTTTGCACTGACAA 63423 Query 5145 ATGGAAAGGTGTATGATATCACAGAGTGGGCTGGATGCCAGCGTGTGGGAATCTCCCCAG 5204 |||||||||| ||||| |||||||||| || | ||||||||| |||| ||||| ||| || Sbjct 63422 ATGGAAAGGTCTATGACATCACAGAGTAGGATAGATGCCAGCATGTGAGAATCCCCCAAG 63363 Query 5205 ATACCCACAGAGTCCCTTATCACATCCCATTTGGTTCACGGATGCCAGGTACCAGCGACC 5264 | ||| |||||| | |||||||||| |||| |||| || | | ||| ||||| | | Sbjct 63362 AAACC--CAGAGTTCTTTATCACATCACATTCAGTTCTGGGTTACTAGGCACCAGTGGTC 63305 Query 5265 AGA-GAGAG 5272 ||| ||||| Sbjct 63304 AGAGGAGAG 63296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 40141092577024