Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_001608.3 Length=19111 Score E Sequences producing significant alignments: (Bits) Value seq96522 102 1e-17 >seq96522 Length=1638485 Score = 102 bits (112), Expect = 1e-17 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 923 GAATACGCACCATTTGCACGGGTTCTGAATTTATCAGGGATTAACAACCTCGAACATGGA 982 ||||| ||||||||||| ||| | || || || |||||| | || ||| | | ||||||| Sbjct 690095 GAATATGCACCATTTGCTCGGATACTAAACTTGTCAGGGGTAAATAACTTAGGACATGGA 690154 Query 983 CTCTATCCTCAGCTTTCAGCAATTGCGCTGGGTGTGGCAACAGCACACGGCAGTACATTG 1042 | | || ||| | || |||||||| | ||| || ||||||||| || || |||||| Sbjct 690155 TTATTTCTGCAGTTGTCTGCAATTGCCCAGGGAGTAGCAACAGCATGTGGAAGAACATTG 690214 Query 1043 GCTGGTGTCAATGTTGGCGAACAATATCAACAACTACGAGA 1083 || ||| ||| | || || || || || |||||| |||| Sbjct 690215 GCAGGTATCACAGAGGGTGAGCAGTACCAGCAACTATGAGA 690255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 60952553937726